Mercurial > repos > jjohnson > ensembl_cdna_translate

diff ensembl_cdna_translate.xml @ 4:d1055a763560 draft

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Uploaded
author jjohnson
date Wed, 29 Nov 2017 17:08:07 -0500
parents b7f2f5e3390c
children f8e0e5e237a5
line wrap: on
line diff
--- a/ensembl_cdna_translate.xml	Wed Nov 29 16:33:26 2017 -0500
+++ b/ensembl_cdna_translate.xml	Wed Nov 29 17:08:07 2017 -0500
@@ -32,6 +32,10 @@
         #end if
         #if str($output_choice).find('translation') >= 0:
           | python '$__tool_directory__/ensembl_cdna_translate.py' -i '-' 
+            --min_length = $min_length
+            #if $enzyme:
+                --enzyme '$enzyme'
+            #end if
             #if $input and str($output_choice).find('transcript_bed') >= 0:
                 --transcripts '$transcript_bed'
             #end if
@@ -41,9 +45,6 @@
             #if str($output_choice).find('translation_fasta') >= 0: 
                 --fasta '$translation_fasta'
             #end if
-            #if $enzyme:
-                --enzyme '$enzyme'
-            #end if
         #end if
        
     ]]></command>