Mercurial > repos > jjohnson > ensembl_cdna_translate
comparison ensembl_cdna_translate.xml @ 4:d1055a763560 draft
Uploaded
| author | jjohnson |
|---|---|
| date | Wed, 29 Nov 2017 17:08:07 -0500 |
| parents | b7f2f5e3390c |
| children | f8e0e5e237a5 |
comparison
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| 3:410bb2292786 | 4:d1055a763560 |
|---|---|
| 30 --transcripts '-' | 30 --transcripts '-' |
| 31 #end if | 31 #end if |
| 32 #end if | 32 #end if |
| 33 #if str($output_choice).find('translation') >= 0: | 33 #if str($output_choice).find('translation') >= 0: |
| 34 | python '$__tool_directory__/ensembl_cdna_translate.py' -i '-' | 34 | python '$__tool_directory__/ensembl_cdna_translate.py' -i '-' |
| 35 --min_length = $min_length | |
| 36 #if $enzyme: | |
| 37 --enzyme '$enzyme' | |
| 38 #end if | |
| 35 #if $input and str($output_choice).find('transcript_bed') >= 0: | 39 #if $input and str($output_choice).find('transcript_bed') >= 0: |
| 36 --transcripts '$transcript_bed' | 40 --transcripts '$transcript_bed' |
| 37 #end if | 41 #end if |
| 38 #if str($output_choice).find('translation_bed') >= 0: | 42 #if str($output_choice).find('translation_bed') >= 0: |
| 39 --bed '$translation_bed' | 43 --bed '$translation_bed' |
| 40 #end if | 44 #end if |
| 41 #if str($output_choice).find('translation_fasta') >= 0: | 45 #if str($output_choice).find('translation_fasta') >= 0: |
| 42 --fasta '$translation_fasta' | 46 --fasta '$translation_fasta' |
| 43 #end if | |
| 44 #if $enzyme: | |
| 45 --enzyme '$enzyme' | |
| 46 #end if | 47 #end if |
| 47 #end if | 48 #end if |
| 48 | 49 |
| 49 ]]></command> | 50 ]]></command> |
| 50 <inputs> | 51 <inputs> |