Mercurial > repos > jjohnson > eggnog_mapper

changeset 8:c2d4738c3282 draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper commit 288c3043b10594647e9f6e5de56bf98a38779f75-dirty
author jjohnson
date Fri, 08 Nov 2019 14:40:14 -0500
parents 69ab06b777c6
children
files test-data/cached_locally/hmmdb_levels/thaNOG_hmm/thaNOG_hmm.all_hmm.h3f test-data/cached_locally/hmmdb_levels/thaNOG_hmm/thaNOG_hmm.all_hmm.h3i test-data/cached_locally/hmmdb_levels/thaNOG_hmm/thaNOG_hmm.all_hmm.h3m test-data/cached_locally/hmmdb_levels/thaNOG_hmm/thaNOG_hmm.all_hmm.h3p test-data/cached_locally/hmmdb_levels/thaNOG_hmm/thaNOG_hmm.all_hmm.idmap test-data/cached_locally/hmmdb_levels/thaNOG_hmm/thaNOG_hmm.all_hmm.log tool_data_table_conf.xml.sample
diffstat 7 files changed, 2 insertions(+), 1473 deletions(-) [+]
line wrap: on
line diff
Binary file test-data/cached_locally/hmmdb_levels/thaNOG_hmm/thaNOG_hmm.all_hmm.h3f has changed
Binary file test-data/cached_locally/hmmdb_levels/thaNOG_hmm/thaNOG_hmm.all_hmm.h3i has changed
Binary file test-data/cached_locally/hmmdb_levels/thaNOG_hmm/thaNOG_hmm.all_hmm.h3m has changed
Binary file test-data/cached_locally/hmmdb_levels/thaNOG_hmm/thaNOG_hmm.all_hmm.h3p has changed
--- a/test-data/cached_locally/hmmdb_levels/thaNOG_hmm/thaNOG_hmm.all_hmm.idmap	Fri Nov 08 13:06:25 2019 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1465 +0,0 @@
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-1260 thaNOG.ENOG411CB9E.meta_raw
-1261 thaNOG.ENOG411CBJJ.meta_raw
-1262 thaNOG.ENOG411CB8T.meta_raw
-1263 thaNOG.ENOG411CBHC.meta_raw
-1264 thaNOG.ENOG411CBAX.meta_raw
-1265 thaNOG.ENOG411CBP7.meta_raw
-1266 thaNOG.ENOG411CBIJ.meta_raw
-1267 thaNOG.ENOG411CBCV.meta_raw
-1268 thaNOG.ENOG411CBXF.meta_raw
-1269 thaNOG.ENOG411CC3B.meta_raw
-1270 thaNOG.ENOG411CC0Q.meta_raw
-1271 thaNOG.ENOG411CBTH.meta_raw
-1272 thaNOG.ENOG411CCAC.meta_raw
-1273 thaNOG.ENOG411CC4J.meta_raw
-1274 thaNOG.ENOG411CBYP.meta_raw
-1275 thaNOG.ENOG411CC16.meta_raw
-1276 thaNOG.ENOG411CB81.meta_raw
-1277 thaNOG.ENOG411CBW9.meta_raw
-1278 thaNOG.ENOG411CBAK.meta_raw
-1279 thaNOG.ENOG411CBNZ.meta_raw
-1280 thaNOG.ENOG411CBRV.meta_raw
-1281 thaNOG.ENOG411CBAV.meta_raw
-1282 thaNOG.ENOG411CB42.meta_raw
-1283 thaNOG.ENOG411CB2F.meta_raw
-1284 thaNOG.ENOG411CBBS.meta_raw
-1285 thaNOG.ENOG411CC88.meta_raw
-1286 thaNOG.ENOG411CBV2.meta_raw
-1287 thaNOG.ENOG411CB7U.meta_raw
-1288 thaNOG.ENOG411CB8G.meta_raw
-1289 thaNOG.ENOG411CBMN.meta_raw
-1290 thaNOG.ENOG411CB2H.meta_raw
-1291 thaNOG.ENOG411CBPZ.meta_raw
-1292 thaNOG.ENOG411CBDT.meta_raw
-1293 thaNOG.ENOG411CC8T.meta_raw
-1294 thaNOG.ENOG411CBHR.meta_raw
-1295 thaNOG.ENOG411CB75.meta_raw
-1296 thaNOG.ENOG411CB3S.meta_raw
-1297 thaNOG.ENOG411CBX7.meta_raw
-1298 thaNOG.ENOG411CC34.meta_raw
-1299 thaNOG.ENOG411CC5V.meta_raw
-1300 thaNOG.ENOG411CBNY.meta_raw
-1301 thaNOG.ENOG411CBC4.meta_raw
-1302 thaNOG.ENOG411CBAB.meta_raw
-1303 thaNOG.ENOG411CBR3.meta_raw
-1304 thaNOG.ENOG411CBDC.meta_raw
-1305 thaNOG.ENOG411CB95.meta_raw
-1306 thaNOG.ENOG411CBZP.meta_raw
-1307 thaNOG.ENOG411CBBW.meta_raw
-1308 thaNOG.ENOG411CB3B.meta_raw
-1309 thaNOG.ENOG411CC1E.meta_raw
-1310 thaNOG.ENOG411CBK7.meta_raw
-1311 thaNOG.ENOG411CBT1.meta_raw
-1312 thaNOG.ENOG411CBBD.meta_raw
-1313 thaNOG.ENOG411CC8F.meta_raw
-1314 thaNOG.ENOG411CBVW.meta_raw
-1315 thaNOG.ENOG411CBTQ.meta_raw
-1316 thaNOG.ENOG411CBPJ.meta_raw
-1317 thaNOG.ENOG411CC2D.meta_raw
-1318 thaNOG.ENOG411CB9D.meta_raw
-1319 thaNOG.ENOG411CBF5.meta_raw
-1320 thaNOG.ENOG411CC89.meta_raw
-1321 thaNOG.ENOG411CBVC.meta_raw
-1322 thaNOG.ENOG411CBWD.meta_raw
-1323 thaNOG.ENOG411CB78.meta_raw
-1324 thaNOG.ENOG411CBCB.meta_raw
-1325 thaNOG.ENOG411CB4I.meta_raw
-1326 thaNOG.ENOG411CBE3.meta_raw
-1327 thaNOG.ENOG411CB71.meta_raw
-1328 thaNOG.ENOG411CBDH.meta_raw
-1329 thaNOG.ENOG411CB2P.meta_raw
-1330 thaNOG.ENOG411CB2T.meta_raw
-1331 thaNOG.ENOG411CC9V.meta_raw
-1332 thaNOG.ENOG411CC77.meta_raw
-1333 thaNOG.ENOG411CBJ0.meta_raw
-1334 thaNOG.ENOG411CC23.meta_raw
-1335 thaNOG.ENOG411CBKW.meta_raw
-1336 thaNOG.ENOG411CBWW.meta_raw
-1337 thaNOG.ENOG411CBY1.meta_raw
-1338 thaNOG.ENOG411CBYG.meta_raw
-1339 thaNOG.ENOG411CB4T.meta_raw
-1340 thaNOG.ENOG411CC9A.meta_raw
-1341 thaNOG.ENOG411CCA2.meta_raw
-1342 thaNOG.ENOG411CBN6.meta_raw
-1343 thaNOG.ENOG411CBNQ.meta_raw
-1344 thaNOG.ENOG411CC3P.meta_raw
-1345 thaNOG.ENOG411CBNI.meta_raw
-1346 thaNOG.ENOG411CB6T.meta_raw
-1347 thaNOG.ENOG411CBFB.meta_raw
-1348 thaNOG.ENOG411CB7V.meta_raw
-1349 thaNOG.ENOG411CB68.meta_raw
-1350 thaNOG.ENOG411CBQH.meta_raw
-1351 thaNOG.ENOG411CBWG.meta_raw
-1352 thaNOG.ENOG411CC01.meta_raw
-1353 thaNOG.ENOG411CBNU.meta_raw
-1354 thaNOG.ENOG411CB4E.meta_raw
-1355 thaNOG.ENOG411CBYC.meta_raw
-1356 thaNOG.ENOG411CBA9.meta_raw
-1357 thaNOG.ENOG411CB82.meta_raw
-1358 thaNOG.ENOG411CCAM.meta_raw
-1359 thaNOG.ENOG411CBSE.meta_raw
-1360 thaNOG.ENOG411CBTG.meta_raw
-1361 thaNOG.ENOG411CBIZ.meta_raw
-1362 thaNOG.ENOG411CBNB.meta_raw
-1363 thaNOG.ENOG411CBJ7.meta_raw
-1364 thaNOG.ENOG411CBYW.meta_raw
-1365 thaNOG.ENOG411CC0M.meta_raw
-1366 thaNOG.ENOG411CBNX.meta_raw
-1367 thaNOG.ENOG411CB6K.meta_raw
-1368 thaNOG.ENOG411CBD3.meta_raw
-1369 thaNOG.ENOG411CC4F.meta_raw
-1370 thaNOG.ENOG411CC43.meta_raw
-1371 thaNOG.ENOG411CC8Q.meta_raw
-1372 thaNOG.ENOG411CBUT.meta_raw
-1373 thaNOG.ENOG411CBM7.meta_raw
-1374 thaNOG.ENOG411CBH4.meta_raw
-1375 thaNOG.ENOG411CC5M.meta_raw
-1376 thaNOG.ENOG411CBTT.meta_raw
-1377 thaNOG.ENOG411CB5U.meta_raw
-1378 thaNOG.ENOG411CC9D.meta_raw
-1379 thaNOG.ENOG411CBX8.meta_raw
-1380 thaNOG.ENOG411CBGT.meta_raw
-1381 thaNOG.ENOG411CBQD.meta_raw
-1382 thaNOG.ENOG411CBX6.meta_raw
-1383 thaNOG.ENOG411CBGV.meta_raw
-1384 thaNOG.ENOG411CC97.meta_raw
-1385 thaNOG.ENOG411CBMT.meta_raw
-1386 thaNOG.ENOG411CBFS.meta_raw
-1387 thaNOG.ENOG411CBS7.meta_raw
-1388 thaNOG.ENOG411CBHF.meta_raw
-1389 thaNOG.ENOG411CBS2.meta_raw
-1390 thaNOG.ENOG411CBNR.meta_raw
-1391 thaNOG.ENOG411CC5R.meta_raw
-1392 thaNOG.ENOG411CBAE.meta_raw
-1393 thaNOG.ENOG411CBWX.meta_raw
-1394 thaNOG.ENOG411CC7U.meta_raw
-1395 thaNOG.ENOG411CC3R.meta_raw
-1396 thaNOG.ENOG411CC8P.meta_raw
-1397 thaNOG.ENOG411CC3F.meta_raw
-1398 thaNOG.ENOG411CBBZ.meta_raw
-1399 thaNOG.ENOG411CBM5.meta_raw
-1400 thaNOG.ENOG411CB4R.meta_raw
-1401 thaNOG.ENOG411CBH9.meta_raw
-1402 thaNOG.ENOG411CBU4.meta_raw
-1403 thaNOG.ENOG411CBQ4.meta_raw
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-1405 thaNOG.ENOG411CC1T.meta_raw
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-1407 thaNOG.ENOG411CB8X.meta_raw
-1408 thaNOG.ENOG411CBRX.meta_raw
-1409 thaNOG.ENOG411CBC5.meta_raw
-1410 thaNOG.ENOG411CBQ7.meta_raw
-1411 thaNOG.ENOG411CBVK.meta_raw
-1412 thaNOG.ENOG411CBQJ.meta_raw
-1413 thaNOG.ENOG411CBSI.meta_raw
-1414 thaNOG.ENOG411CBD1.meta_raw
-1415 thaNOG.ENOG411CC24.meta_raw
-1416 thaNOG.ENOG411CCA4.meta_raw
-1417 thaNOG.ENOG411CC72.meta_raw
-1418 thaNOG.ENOG411CBQ2.meta_raw
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-1420 thaNOG.ENOG411CBA0.meta_raw
-1421 thaNOG.ENOG411CC6G.meta_raw
-1422 thaNOG.ENOG411CBQ1.meta_raw
-1423 thaNOG.ENOG411CCAE.meta_raw
-1424 thaNOG.ENOG411CCA3.meta_raw
-1425 thaNOG.ENOG411CBNM.meta_raw
-1426 thaNOG.ENOG411CBZ5.meta_raw
-1427 thaNOG.ENOG411CC9J.meta_raw
-1428 thaNOG.ENOG411CBRH.meta_raw
-1429 thaNOG.ENOG411CBFC.meta_raw
-1430 thaNOG.ENOG411CBJV.meta_raw
-1431 thaNOG.ENOG411CBJS.meta_raw
-1432 thaNOG.ENOG411CBZW.meta_raw
-1433 thaNOG.ENOG411CBQQ.meta_raw
-1434 thaNOG.ENOG411CBQA.meta_raw
-1435 thaNOG.ENOG411CBG7.meta_raw
-1436 thaNOG.ENOG411CBGD.meta_raw
-1437 thaNOG.ENOG411CB9Y.meta_raw
-1438 thaNOG.ENOG411CB2R.meta_raw
-1439 thaNOG.ENOG411CB9U.meta_raw
-1440 thaNOG.ENOG411CBWS.meta_raw
-1441 thaNOG.ENOG411CBWQ.meta_raw
-1442 thaNOG.ENOG411CB7Q.meta_raw
-1443 thaNOG.ENOG411CBMM.meta_raw
-1444 thaNOG.ENOG411CBRG.meta_raw
-1445 thaNOG.ENOG411CBG1.meta_raw
-1446 thaNOG.ENOG411CC8W.meta_raw
-1447 thaNOG.ENOG411CBBG.meta_raw
-1448 thaNOG.ENOG411CB8S.meta_raw
-1449 thaNOG.ENOG411CC5F.meta_raw
-1450 thaNOG.ENOG411CBC9.meta_raw
-1451 thaNOG.ENOG411CBHE.meta_raw
-1452 thaNOG.ENOG411CBPR.meta_raw
-1453 thaNOG.ENOG411CB88.meta_raw
-1454 thaNOG.ENOG411CBV1.meta_raw
-1455 thaNOG.ENOG411CC9N.meta_raw
-1456 thaNOG.ENOG411CBK9.meta_raw
-1457 thaNOG.ENOG411CB8F.meta_raw
-1458 thaNOG.ENOG411CBVZ.meta_raw
-1459 thaNOG.ENOG411CC5S.meta_raw
-1460 thaNOG.ENOG411CBXJ.meta_raw
-1461 thaNOG.ENOG411CC0E.meta_raw
-1462 thaNOG.ENOG411CBHU.meta_raw
-1463 thaNOG.ENOG411CBHT.meta_raw
-1464 thaNOG.ENOG411CB87.meta_raw
--- a/test-data/cached_locally/hmmdb_levels/thaNOG_hmm/thaNOG_hmm.all_hmm.log	Fri Nov 08 13:06:25 2019 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-Working...    done.
-Pressed and indexed 1464 HMMs (1464 names).
-Models pressed into binary file:   thaNOG_hmm/thaNOG_hmm.all_hmm.h3m
-SSI index for binary model file:   thaNOG_hmm/thaNOG_hmm.all_hmm.h3i
-Profiles (MSV part) pressed into:  thaNOG_hmm/thaNOG_hmm.all_hmm.h3f
-Profiles (remainder) pressed into: thaNOG_hmm/thaNOG_hmm.all_hmm.h3p
--- a/tool_data_table_conf.xml.sample	Fri Nov 08 13:06:25 2019 -0500
+++ b/tool_data_table_conf.xml.sample	Fri Nov 08 14:40:14 2019 -0500
@@ -1,10 +1,10 @@
 <tables>
     <!-- Locations of all eggnog_mapper data -->
-    <table name="eggnog_mapper_db" comment_char="#">
+    <table name="eggnog_mapper_db" comment_char="#" allow_duplicate_entries="False">
         <columns>value,name,path</columns>
         <file path="tool-data/eggnog_mapper_db.loc" />
     </table>
-    <table name="eggnog_mapper_hmm_dbs" comment_char="#">
+    <table name="eggnog_mapper_hmm_dbs" comment_char="#" allow_duplicate_entries="False">
         <columns>key,db_version,value,name,path</columns>
         <file path="tool-data/eggnog_mapper_hmm_dbs.loc" />
     </table>