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annotate tool-data/defuse_reference.loc.sample @ 28:f51a95bdc38e

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Add breakpoints.bam output derived from breakpoints.genome.psl
author Jim Johnson <jj@umn.edu>
date Tue, 03 Sep 2013 06:41:19 -0500
parents 1bc79c9d6165
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1 ## Configurstion info for prepared data references for DeFuse
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1bc79c9d6165 Move tool-data/defuse.loc.sample to tool-data/defuse_reference.loc.sample
Jim Johnson <jj@umn.edu>
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2 ## http://sourceforge.net/apps/mediawiki/defuse/index.php?title=DeFuse_Version_0.6.0
1bc79c9d6165 Move tool-data/defuse.loc.sample to tool-data/defuse_reference.loc.sample
Jim Johnson <jj@umn.edu>
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3 ## 4 columns separated by the TAB character
1bc79c9d6165 Move tool-data/defuse.loc.sample to tool-data/defuse_reference.loc.sample
Jim Johnson <jj@umn.edu>
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4 ## The 4th column has the path to the defuse config.txt file, it needs to have the dataset_directory set the directory path where the defuse reference data resides.
1bc79c9d6165 Move tool-data/defuse.loc.sample to tool-data/defuse_reference.loc.sample
Jim Johnson <jj@umn.edu>
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5 ## The defuse galaxy tool will substitute the directory path of config.txt if the dataset_directory property is not set '__DATASET_DIRECTORY__'
1bc79c9d6165 Move tool-data/defuse.loc.sample to tool-data/defuse_reference.loc.sample
Jim Johnson <jj@umn.edu>
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6 #<unique_build_id> <dbkey> <display_name> <file_base_path>
1bc79c9d6165 Move tool-data/defuse.loc.sample to tool-data/defuse_reference.loc.sample
Jim Johnson <jj@umn.edu>
parents: 0
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7 GRCh37 GRCh37 Human GRCh37 (hg19) /depot/GRCh37/defuse/GRCh37.config