Mercurial > repos > jjohnson > data_manager_snpeff
changeset 1:8ac7bbaac976
Update to snpEff version 4.0
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Thu, 16 Oct 2014 07:21:49 -0500 |
| parents | bc50aa3b328a |
| children | 5a01e5cfa6bc |
| files | data_manager/data_manager_snpEff_databases.xml data_manager/data_manager_snpEff_download.xml tool_dependencies.xml |
| diffstat | 3 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/data_manager/data_manager_snpEff_databases.xml Thu Jun 26 09:13:02 2014 -0400 +++ b/data_manager/data_manager_snpEff_databases.xml Thu Oct 16 07:21:49 2014 -0500 @@ -1,7 +1,7 @@ -<tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="3.6" tool_type="manage_data"> +<tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="4.0" tool_type="manage_data"> <description>Read the list of available snpEff databases</description> <requirements> - <requirement type="package" version="3.6">snpEff</requirement> + <requirement type="package" version="4.0">snpEff</requirement> </requirements> <command interpreter="python"> data_manager_snpEff_databases.py --jar_path \$SNPEFF_JAR_PATH/snpEff.jar "$out_file"
--- a/data_manager/data_manager_snpEff_download.xml Thu Jun 26 09:13:02 2014 -0400 +++ b/data_manager/data_manager_snpEff_download.xml Thu Oct 16 07:21:49 2014 -0500 @@ -1,7 +1,7 @@ -<tool id="data_manager_snpeff_download" name="SnpEff Download" version="3.6" tool_type="manage_data"> +<tool id="data_manager_snpeff_download" name="SnpEff Download" version="4.0" tool_type="manage_data"> <description>Download a new database</description> <requirements> - <requirement type="package" version="3.6">snpEff</requirement> + <requirement type="package" version="4.0">snpEff</requirement> </requirements> <command interpreter="python"> data_manager_snpEff_download.py --jar_path \$SNPEFF_JAR_PATH/snpEff.jar --config \$SNPEFF_JAR_PATH/snpEff.config
--- a/tool_dependencies.xml Thu Jun 26 09:13:02 2014 -0400 +++ b/tool_dependencies.xml Thu Oct 16 07:21:49 2014 -0500 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <tool_dependency> - <package name="snpEff" version="3.6"> - <repository name="package_snpeff_3_6" owner="jjohnson" changeset_revision="849895b37940" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> + <package name="snpEff" version="4.0"> + <repository name="package_snpeff_4_0" owner="jjohnson" changeset_revision="849895b37940" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> </package> </tool_dependency>