# HG changeset patch # User Jim Johnson # Date 1413462109 18000 # Node ID 8ac7bbaac9761aae3bfba5140deede298ab24835 # Parent bc50aa3b328a808a13dddbbcbd417a1a2c97bba4 Update to snpEff version 4.0 diff -r bc50aa3b328a -r 8ac7bbaac976 data_manager/data_manager_snpEff_databases.xml --- a/data_manager/data_manager_snpEff_databases.xml Thu Jun 26 09:13:02 2014 -0400 +++ b/data_manager/data_manager_snpEff_databases.xml Thu Oct 16 07:21:49 2014 -0500 @@ -1,7 +1,7 @@ - + Read the list of available snpEff databases - snpEff + snpEff data_manager_snpEff_databases.py --jar_path \$SNPEFF_JAR_PATH/snpEff.jar "$out_file" diff -r bc50aa3b328a -r 8ac7bbaac976 data_manager/data_manager_snpEff_download.xml --- a/data_manager/data_manager_snpEff_download.xml Thu Jun 26 09:13:02 2014 -0400 +++ b/data_manager/data_manager_snpEff_download.xml Thu Oct 16 07:21:49 2014 -0500 @@ -1,7 +1,7 @@ - + Download a new database - snpEff + snpEff data_manager_snpEff_download.py --jar_path \$SNPEFF_JAR_PATH/snpEff.jar --config \$SNPEFF_JAR_PATH/snpEff.config diff -r bc50aa3b328a -r 8ac7bbaac976 tool_dependencies.xml --- a/tool_dependencies.xml Thu Jun 26 09:13:02 2014 -0400 +++ b/tool_dependencies.xml Thu Oct 16 07:21:49 2014 -0500 @@ -1,7 +1,7 @@ - - + +