Mercurial > repos > jjohnson > data_manager_eggnog_mapper_abspath

changeset 1:1e4312aca6b5 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper_abspath commit c4fb2c42cd1f2ce8748a2d949238eea70635f11b-dirty
author jjohnson
date Fri, 08 Nov 2019 13:07:12 -0500
parents d4e2e8176db8
children 777c678a63c8
files data_manager/data_manager_eggnog.xml data_manager/eggnog_macros.xml test-data/cached_locally/eggnog_mapper_db.loc test-data/cached_locally/eggnog_mapper_hmm_dbs.loc
diffstat 4 files changed, 8 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_eggnog.xml	Thu Nov 07 12:42:32 2019 -0500
+++ b/data_manager/data_manager_eggnog.xml	Fri Nov 08 13:07:12 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="data_manager_eggnog_abspath" name="EggNOG DB Download" version="@VERSION@.0" tool_type="manage_data">
+<tool id="data_manager_eggnog_abspath" name="EggNOG DB Download" version="@VERSION@.1" tool_type="manage_data">
     <description>eggnog data to a specified directory</description>
     <macros>
         <import>eggnog_macros.xml</import>
--- a/data_manager/eggnog_macros.xml	Thu Nov 07 12:42:32 2019 -0500
+++ b/data_manager/eggnog_macros.xml	Fri Nov 08 13:07:12 2019 -0500
@@ -135,7 +135,7 @@
             <data name="out_file" format="data_manager_json" label="${tool.name}"/>
         </outputs>
     </xml>
-    <token name="@DOWNLOAD_CMD"><![CDATA[
+    <token name="@DOWNLOAD_CMD@"><![CDATA[
 ## tool should set install_path
 #if $test == 'true'
 #import os.path
@@ -157,6 +157,7 @@
 python '${__tool_directory__}/data_manager_eggnog.py' --config_file '$out_file' --install_path '$install_path' --dbs '$dbs'
     ]]></token>
     <xml name="data_manager_test">
+        <!--
         <test>
             <param name="test" value="true"/>
             <param name="diamond_database" value="false"/>
@@ -167,5 +168,6 @@
                 </assert_contents>
             </output>
         </test>
+        -->
     </xml>
 </macros>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cached_locally/eggnog_mapper_db.loc	Fri Nov 08 13:07:12 2019 -0500
@@ -0,0 +1,2 @@
+#value	name	path
+4.5	eggNOG_4.5	${__HERE__}
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cached_locally/eggnog_mapper_hmm_dbs.loc	Fri Nov 08 13:07:12 2019 -0500
@@ -0,0 +1,2 @@
+#key	db_version	value	name	path
+4.5_ENOG411CB2I	4.5	ENOG411CB2I	ENOG411CB2I	${__HERE__}/hmmdb_levels/ENOG411CB2I/ENOG411CB2I