Mercurial > repos > jjohnson > cistrome_ceas

diff sitepro.xml @ 3:f404ec7f679c

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Add Conservation Plot tool
author Jim Johnson <jj@umn.edu>
date Wed, 17 Dec 2014 15:09:37 -0600
parents 45e094f8858f
children
line wrap: on
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--- a/sitepro.xml	Mon Dec 15 15:31:58 2014 -0600
+++ b/sitepro.xml	Wed Dec 17 15:09:37 2014 -0600
@@ -1,9 +1,13 @@
 <tool id="ceas_sitepro" name="SitePro: Score profile near Intervals" version="0.1.0">
   <description>Draw the score profile near a given interval</description>
+  <version_command>sitepro --version</version_command>
   <macros>
     <import>ceas_macros.xml</import>
   </macros>
   <expand macro="requirements" />
+  <stdio>
+    <exit_code range="1:"  level="fatal"   description="Failed" />
+  </stdio>
   <command>
 sitepro 
 #if $mode.mode_select == "single"
@@ -20,7 +24,7 @@
   -b "$m.bfile" -l "$m.label"
  #end for
 #end if
---span=$span --pf-res=$pfres --name=$name --dump &amp;> $log  
+--span=$span --pf-res=$pfres --name=$name --dump &amp;> $log   &amp;&amp;
 cat *_dump.txt > $dump
   </command>
   <inputs>