Mercurial > repos > jjohnson > cistrome_ceas

comparison sitepro.xml @ 3:f404ec7f679c

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Add Conservation Plot tool
author Jim Johnson <jj@umn.edu>
date Wed, 17 Dec 2014 15:09:37 -0600
parents 45e094f8858f
children
comparison
equal deleted inserted replaced
2:45e094f8858f 3:f404ec7f679c
1 <tool id="ceas_sitepro" name="SitePro: Score profile near Intervals" version="0.1.0"> 1 <tool id="ceas_sitepro" name="SitePro: Score profile near Intervals" version="0.1.0">
2 <description>Draw the score profile near a given interval</description> 2 <description>Draw the score profile near a given interval</description>
3 <version_command>sitepro --version</version_command>
3 <macros> 4 <macros>
4 <import>ceas_macros.xml</import> 5 <import>ceas_macros.xml</import>
5 </macros> 6 </macros>
6 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <stdio>
9 <exit_code range="1:" level="fatal" description="Failed" />
10 </stdio>
7 <command> 11 <command>
8 sitepro 12 sitepro
9 #if $mode.mode_select == "single" 13 #if $mode.mode_select == "single"
10 -w $mode.wfile -b $mode.bfile 14 -w $mode.wfile -b $mode.bfile
11 #elif $mode.mode_select == "multiwig" 15 #elif $mode.mode_select == "multiwig"
18 -w $mode.wfile -b $mode.bfile -l $mode.label 22 -w $mode.wfile -b $mode.bfile -l $mode.label
19 #for $m in $mode.more 23 #for $m in $mode.more
20 -b "$m.bfile" -l "$m.label" 24 -b "$m.bfile" -l "$m.label"
21 #end for 25 #end for
22 #end if 26 #end if
23 --span=$span --pf-res=$pfres --name=$name --dump &amp;> $log 27 --span=$span --pf-res=$pfres --name=$name --dump &amp;> $log &amp;&amp;
24 cat *_dump.txt > $dump 28 cat *_dump.txt > $dump
25 </command> 29 </command>
26 <inputs> 30 <inputs>
27 <param name="name" type="hidden" value="sitepro_out"/> 31 <param name="name" type="hidden" value="sitepro_out"/>
28 <conditional name="mode"> 32 <conditional name="mode">