Mercurial > repos > jjohnson > cistrome_beta

comparison beta_plus.xml @ 4:52ed4957ace9 draft

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planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/cistrome_beta commit c7ec1c7f1eb5f67fcd76e365b3cd0b35ef3509e6-dirty
author jjohnson
date Thu, 22 Mar 2018 10:48:43 -0400
parents 067573bac905
children
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3:067573bac905 4:52ed4957ace9
10 #include source=$common_opts# 10 #include source=$common_opts#
11 #include source=$genome_opts# 11 #include source=$genome_opts#
12 #include source=$ref_genome_seq_opts# 12 #include source=$ref_genome_seq_opts#
13 #include source=$extended_opts# 13 #include source=$extended_opts#
14 --mn $motifs 14 --mn $motifs
15 &> $log && 15 #include source=$write_log#
16 mkdir -p $motifresult.extra_files_path && 16 && mkdir -p $motifresult.extra_files_path
17 cp BETA_OUTPUT/motifresult/betamotif.html $motifresult && 17 && cp BETA_OUTPUT/motifresult/betamotif.html $motifresult
18 cp BETA_OUTPUT/motifresult/*.js $motifresult.extra_files_path && 18 && cp BETA_OUTPUT/motifresult/*.js $motifresult.extra_files_path
19 cp BETA_OUTPUT/motifresult/*.css $motifresult.extra_files_path && 19 && cp BETA_OUTPUT/motifresult/*.css $motifresult.extra_files_path
20 cp -r BETA_OUTPUT/motifresult/img $motifresult.extra_files_path 20 && cp -r BETA_OUTPUT/motifresult/img $motifresult.extra_files_path
21 ]]></command> 21 ]]></command>
22 <inputs> 22 <inputs>
23 <expand macro="common_params" /> 23 <expand macro="common_params" />
24 <expand macro="genome_params" /> 24 <expand macro="genome_params" />
25 <expand macro="refGenomeSourceConditional" /> 25 <expand macro="refGenomeSourceConditional" />