Mercurial > repos > jjohnson > cistrome_beta

diff beta_plus.xml @ 4:52ed4957ace9 draft

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planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/cistrome_beta commit c7ec1c7f1eb5f67fcd76e365b3cd0b35ef3509e6-dirty
author jjohnson
date Thu, 22 Mar 2018 10:48:43 -0400
parents 067573bac905
children
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--- a/beta_plus.xml	Thu Mar 22 08:48:00 2018 -0400
+++ b/beta_plus.xml	Thu Mar 22 10:48:43 2018 -0400
@@ -12,12 +12,12 @@
         #include source=$ref_genome_seq_opts#
         #include source=$extended_opts#
         --mn $motifs
-        &> $log &&
-        mkdir -p $motifresult.extra_files_path    &&
-        cp BETA_OUTPUT/motifresult/betamotif.html $motifresult    &&
-        cp BETA_OUTPUT/motifresult/*.js $motifresult.extra_files_path &&
-        cp BETA_OUTPUT/motifresult/*.css $motifresult.extra_files_path &&
-        cp -r BETA_OUTPUT/motifresult/img $motifresult.extra_files_path
+        #include source=$write_log#
+        && mkdir -p $motifresult.extra_files_path
+        && cp BETA_OUTPUT/motifresult/betamotif.html $motifresult
+        && cp BETA_OUTPUT/motifresult/*.js $motifresult.extra_files_path
+        && cp BETA_OUTPUT/motifresult/*.css $motifresult.extra_files_path
+        && cp -r BETA_OUTPUT/motifresult/img $motifresult.extra_files_path
     ]]></command>
     <inputs>
         <expand macro="common_params" />