Mercurial > repos > jjohnson > cdhit

changeset 6:f0c20796d33a

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Update tool_dependencies, reinstate test
author Jim Johnson <jj@umn.edu>
date Tue, 11 Sep 2012 08:55:27 -0500
parents 22b6a4412ea6
children 3961e84d6225
files cd_hit_est.xml tool_dependencies.xml
diffstat 2 files changed, 1 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/cd_hit_est.xml	Fri Sep 07 14:11:56 2012 -0500
+++ b/cd_hit_est.xml	Tue Sep 11 08:55:27 2012 -0500
@@ -28,7 +28,6 @@
   <data format="fasta" name="fasta_out" label="${tool.name} on ${on_string}: representatives.fasta" from_work_dir="rep_seq"/>
  </outputs>
  <tests>
-  <!--
   <test>
     <param name="fasta_in" value="cd_hit_est_in.fa" />
     <param name="similarity" value="0.9"/>
@@ -45,7 +44,6 @@
         </assert_contents>
     </output>
   </test>
-  -->
  </tests>
  <help>
 **CD-HIT-EST**
--- a/tool_dependencies.xml	Fri Sep 07 14:11:56 2012 -0500
+++ b/tool_dependencies.xml	Tue Sep 11 08:55:27 2012 -0500
@@ -3,7 +3,7 @@
     <package name="cd-hit" version="4.6.1">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">https://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action>
+                <action type="download_by_url">http://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action>
                 <action type="shell_command">make openmp=yes</action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>