Mercurial > repos > jjohnson > cdhit

view tool_dependencies.xml @ 6:f0c20796d33a

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Update tool_dependencies, reinstate test
author Jim Johnson <jj@umn.edu>
date Tue, 11 Sep 2012 08:55:27 -0500
parents 12447208b8cb
children 3961e84d6225
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="cd-hit" version="4.6.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action>
                <action type="shell_command">make openmp=yes</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
These links provide information for building the cdhit package:

http://weizhong-lab.ucsd.edu/cd-hit/

https://code.google.com/p/cdhit/

https://code.google.com/p/cdhit/source/browse/README

        </readme>
    </package>
</tool_dependency>