Mercurial > repos > jjohnson > cdhit

diff tool_dependencies.xml @ 9:55e57243b131

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Add install PREFIX to make install command in tool_dependencies.xml
author Jim Johnson <jj@umn.edu>
date Thu, 13 Sep 2012 19:54:21 -0500
parents 438677e99ef8
children 211ca88ce047
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Sep 13 15:58:08 2012 -0500
+++ b/tool_dependencies.xml	Thu Sep 13 19:54:21 2012 -0500
@@ -5,7 +5,11 @@
             <actions>
                 <action type="download_by_url">http://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action>
                 <action type="shell_command">mkdir -p $INSTALL_DIR/bin/</action>
-                <action type="shell_command">make openmp=yes PREFIX=$INSTALL_DIR/bin/ install</action>
+                <action type="shell_command">pwd</action>
+                <action type="shell_command">ls</action>
+                <action type="shell_command">cd cd-hit-v4.6.1-2012-08-27</action>
+                <action type="shell_command">make openmp=yes</action>
+                <action type="shell_command">make PREFIX=$INSTALL_DIR/bin/ install</action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>