Mercurial > repos > jjohnson > bcftools_plugin_missing2ref

diff test-data/consensus.vcf @ 0:ff65d6e0809b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
author jjohnson
date Sat, 25 Jun 2016 20:51:04 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/consensus.vcf	Sat Jun 25 20:51:04 2016 -0400
@@ -0,0 +1,18 @@
+##fileformat=VCFv4.2
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
+##ALT=<ID=DEL,Description="Deletion">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NA001
+1	5	.	C	a	.	PASS	.	GT	0/1
+1	5	.	C	t	.	PASS	.	GT	0/1
+1	7	.	T	a	.	PASS	.	GT	.
+1	10	.	G	a	.	PASS	.	GT	0/1
+1	12	.	GACA	ga	.	PASS	.	GT	0/1
+1	16	.	T	taaa	.	PASS	.	GT	1/1
+1	19	.	A	c	.	PASS	.	GT	0/1
+1	61	.	C	a	.	PASS	.	GT	0/1
+2	61	.	AGAG	aa	.	PASS	.	GT	0/1
+2	119	.	AAA	t	.	PASS	.	GT	0/1
+2	179	.	G	gacgtacgt	.	PASS	.	GT	0/1
+2	200	.	A	<DEL>	.	PASS	END=210	GT	1/0
+2	481	.	T	c,a	.	PASS	.	GT	0/2