Mercurial > repos > jfb > commonality_finder
changeset 0:d7cedf66014a draft
Uploaded
| author | jfb |
|---|---|
| date | Tue, 22 May 2018 18:17:33 -0400 |
| parents | |
| children | ac16c0cefedb |
| files | C and D finder/.shed.yml C and D finder/CandD.R C and D finder/CandD.xml C and D finder/test-data/input1.csv C and D finder/test-data/input2.csv C and D finder/test-data/input3.csv C and D finder/test-data/input4.csv C and D finder/test-data/input5.csv C and D finder/test-data/input6.csv |
| diffstat | 9 files changed, 2019 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/C and D finder/.shed.yml Tue May 22 18:17:33 2018 -0400 @@ -0,0 +1,8 @@ +categories: [Computational chemistry] +description: Commonality_and_Difference_Finder_7_7 +homepage_url: https://pubs.acs.org/doi/abs/10.1021/ja507164a +long_description: This tool is intended for use in conjunction with KinaMine 7-7 and + Kinatest 7-7. This tool allows for comparisons between triplicate replicates of KALIP-KinaMine output +name: Commonality and Difference finderMADE 7 TO 7.R +owner: blank121 +remote_repository_url: https://github.umn.edu/blank121/Commonality-and-difference-finder
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/C and D finder/CandD.R Tue May 22 18:17:33 2018 -0400 @@ -0,0 +1,1118 @@ +FirstSubstrateSet<- read.csv("input1.csv", stringsAsFactors=FALSE) +Firstsubbackfreq<- read.csv("input2.csv", header=FALSE, stringsAsFactors=FALSE) + +SecondSubstrateSet<- read.csv("input3.csv", stringsAsFactors=FALSE) +Secondsubbackfreq<- read.csv("input4.csv", header=FALSE, stringsAsFactors=FALSE) + +ThirdSubstrateSet<- read.csv("input5.csv", stringsAsFactors=FALSE) +Thirdsubbackfreq<- read.csv("input6.csv", header=FALSE, stringsAsFactors=FALSE) + + +args = commandArgs(trailingOnly=TRUE) + +print(args[1]) +print(args[2]) +print(args[3]) + + +#ff you want ONLY FULL MOTIFS, put "YES" here, please use all caps +FullMotifsOnly_questionmark<-args[1] +#If you want ONLY TRUNCATED MOTIFS, put "YES" here, please use all caps +TruncatedMotifsOnly_questionmark<-args[2] +#if you want to find the overlap, put a "YES" here (all caps), if you want to find the non-overlap, put "NO" (all caps) +Are_You_Looking_For_Commonality<-args[3] + + +#then put the names of your output files here +Shared_motifs_table<-"sharedmotifs.csv" +Shared_subbackfreq_table<-"sharedSBF.csv" + +# Shared_motifs_table<-"Shared motifs 7-27-17.csv" +# Shared_subbackfreq_table<-"SubstrateBackgrounFrequency-for-shared-motifs 4 7-27-17.csv" + +First_unshared_motifs_table<-"R1 substrates.csv" +First_unshared_subbackfreq<-"R1 SBF.csv" + +Second_unshared_motifs_table<-"R2 subs.csv" +Second_unshared_subbackfreq<-"R2 SBf.csv" + +Third_unshared_motifs_table<-"R3 subs.csv" +Third_unshared_subbackfreq<-"R3 SBF.csv" + +#final note, this code is going to be unworkable if you want to make a Venn diagram of more than 3 circles. I think I'll poke around +#other languages to see if any of them can do it. +#################################################################################################################################### + + + + + +FirstxY<-rep("xY",times=nrow(FirstSubstrateSet)) +FirstSubstrateSet[,11]<-FirstxY + +SecondxY<-rep("xY",times=nrow(SecondSubstrateSet)) +SecondSubstrateSet[,11]<-SecondxY + +ThirdxY<-rep("xY",times=nrow(ThirdSubstrateSet)) +ThirdSubstrateSet[,11]<-ThirdxY + + + + + + + + + + + +#################################################################################################################################### +#################################################################################################################################### +# better version of this code written in C: what happens when two kinases share a motif, but they found that motif in two +# separate proteins thus two separate accession numbers? +# It should actually output the shared motif and BOTH accession numbers. Right now it does not, it only maps out the second +# accession number. So that needs to be fixed BUT you need to keep the commonality between a motif and its accession number +#################################################################################################################################### +#################################################################################################################################### +#################################################################################################################################### +#################################################################################################################################### + +#Create the motif sets, deciding wether or not you're looking for truncated or full here +#full only +if (Are_You_Looking_For_Commonality=="YES"){ + if (FullMotifsOnly_questionmark=="YES"){ + FTLwtmotifs=matrix(,nrow = nrow(FirstSubstrateSet),ncol=1) + FTLwtAccessionNumbers=matrix(,nrow = nrow(FirstSubstrateSet),ncol=1) + leftspaces<-c() + rightspaces<-c() + for (i in 1:nrow(FirstSubstrateSet)){ + FTLwtletters<-FirstSubstrateSet[i,4:18] + FTLwtletters<-FTLwtletters[FTLwtletters !="XXXXX"] + FTLwtletters<-paste(FTLwtletters, sep="", collapse="") + + + YYYmotif <- unlist(strsplit(FTLwtletters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + + if (YYYLettersToTheLeft > 6 && YYYLettersToTheRight > 6) { + motif<-YYYmotif + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + FTLwtletters<-motif + FTLwtmotifs[i,1]<-FTLwtletters + FTLwtAccessionNumbers[i,1]<-FirstSubstrateSet[i,3] + + } + + } + # FTLwtmotifs <- FTLwtmotifs[!is.na(FTLwtmotifs)] + # FTLwtmotifs<-matrix(FTLwtmotifs,ncol = 1) + # + + D835Ymotifs=matrix(,nrow = nrow(SecondSubstrateSet),ncol=1) + D835YAccessionNumbers<-matrix(,nrow = nrow(SecondSubstrateSet),ncol = 1) + + for (i in 1:nrow(SecondSubstrateSet)){ + D835letters<-SecondSubstrateSet[i,4:18] + D835letters<-D835letters[D835letters !="XXXXX"] + D835letters<-paste(D835letters, sep="", collapse="") + + + YYYmotif <- unlist(strsplit(D835letters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + + if (YYYLettersToTheLeft > 6 && YYYLettersToTheRight > 6) { + motif<-YYYmotif + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + D835letters<-motif + D835Ymotifs[i,1]<-D835letters + D835YAccessionNumbers[i,1]<-SecondSubstrateSet[i,3] + + } + } + + ITDmotifs=matrix(,nrow = nrow(ThirdSubstrateSet),ncol=1) + ITDAccessionNumbers<-matrix(,nrow = nrow(ThirdSubstrateSet)) + + for (i in 1:nrow(ThirdSubstrateSet)){ + ITDletters<-ThirdSubstrateSet[i,4:18] + ITDletters<-ITDletters[ITDletters !="XXXXX"] + ITDletters<-paste(ITDletters, sep="", collapse="") + YYYmotif <- unlist(strsplit(ITDletters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + + if (YYYLettersToTheLeft > 6 && YYYLettersToTheRight > 6) { + motif<-YYYmotif + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + ITDletters<-motif + ITDmotifs[i,1]<-ITDletters + ITDAccessionNumbers[i,1]<-ThirdSubstrateSet[i,3] + + } + } + + } + + ##############################################3 + #Truncated only + if (TruncatedMotifsOnly_questionmark=="YES"){ + FTLwtmotifs=matrix(,nrow = nrow(FirstSubstrateSet),ncol=1) + FTLwtAccessionNumbers=matrix(,nrow = nrow(FirstSubstrateSet),ncol=1) + + for (i in 1:nrow(FirstSubstrateSet)){ + FTLwtletters<-FirstSubstrateSet[i,4:18] + FTLwtletters<-FTLwtletters[FTLwtletters !="XXXXX"] + FTLwtletters<-paste(FTLwtletters, sep="", collapse="") + + + YYYmotif <- unlist(strsplit(FTLwtletters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + + if (YYYLettersToTheLeft < 7 | YYYLettersToTheRight < 7) { + leftspaces<-rep(" ",times=(7-YYYLettersToTheLeft)) + rightspaces<-rep(" ",times=7-(YYYLettersToTheRight)) + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + FTLwtletters<-motif + FTLwtmotifs[i,1]<-FTLwtletters + FTLwtAccessionNumbers[i,1]<-FirstSubstrateSet[i,3] + } + + } + + D835Ymotifs=matrix(,nrow = nrow(SecondSubstrateSet),ncol=1) + D835YAccessionNumbers<-matrix(,nrow = nrow(SecondSubstrateSet),ncol = 1) + + for (i in 1:nrow(SecondSubstrateSet)){ + D835letters<-SecondSubstrateSet[i,4:18] + D835letters<-D835letters[D835letters !="XXXXX"] + D835letters<-paste(D835letters, sep="", collapse="") + + + YYYmotif <- unlist(strsplit(D835letters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + + if (YYYLettersToTheLeft < 7 | YYYLettersToTheRight < 7) { + leftspaces<-rep(" ",times=(7-YYYLettersToTheLeft)) + rightspaces<-rep(" ",times=7-(YYYLettersToTheRight)) + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + D835letters<-motif + D835YAccessionNumbers[i,1]<-SecondSubstrateSet[i,3] + D835Ymotifs[i,1]<-D835letters + } + } + + ITDmotifs=matrix(,nrow = nrow(ThirdSubstrateSet),ncol=1) + ITDAccessionNumbers<-matrix(,nrow = nrow(ThirdSubstrateSet)) + + for (i in 1:nrow(ThirdSubstrateSet)){ + ITDletters<-ThirdSubstrateSet[i,4:18] + ITDletters<-ITDletters[ITDletters !="XXXXX"] + ITDletters<-paste(ITDletters, sep="", collapse="") + YYYmotif <- unlist(strsplit(ITDletters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + + if (YYYLettersToTheLeft < 7 | YYYLettersToTheRight < 7) { + leftspaces<-rep(" ",times=(7-YYYLettersToTheLeft)) + rightspaces<-rep(" ",times=7-(YYYLettersToTheRight)) + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + ITDletters<-motif + ITDAccessionNumbers[i,1]<-ThirdSubstrateSet[i,3] + ITDmotifs[i,1]<-ITDletters + } + } + + } + + ############################################### + #ALL motifs, full and truncated + + if (FullMotifsOnly_questionmark!="YES"&&TruncatedMotifsOnly_questionmark!="YES"){ + FTLwtmotifs=matrix(,nrow = nrow(FirstSubstrateSet),ncol=1) + FTLwtAccessionNumbers=matrix(,nrow = nrow(FirstSubstrateSet),ncol=1) + + for (i in 1:nrow(FirstSubstrateSet)){ + FTLwtletters<-FirstSubstrateSet[i,4:18] + FTLwtletters<-FTLwtletters[FTLwtletters !="XXXXX"] + FTLwtletters<-paste(FTLwtletters, sep="", collapse="") + leftspaces<-c() + rightspaces<-c() + + YYYmotif <- unlist(strsplit(FTLwtletters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + + + if (YYYLettersToTheLeft < 7 | YYYLettersToTheRight < 7) { + leftspaces<-rep(" ",times=(7-YYYLettersToTheLeft)) + rightspaces<-rep(" ",times=7-(YYYLettersToTheRight)) + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + FTLwtletters<-motif + FTLwtmotifs[i,1]<-FTLwtletters + FTLwtAccessionNumbers[i,1]<-FirstSubstrateSet[i,3] + } + + if(YYYLettersToTheLeft>6 && YYYLettersToTheRight>6){ + motif<-YYYmotif + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + FTLwtletters<-motif + FTLwtmotifs[i,1]<-FTLwtletters + FTLwtAccessionNumbers[i,1]<-FirstSubstrateSet[i,3] + + + } + + } + + D835Ymotifs=matrix(,nrow = nrow(SecondSubstrateSet),ncol=1) + D835YAccessionNumbers<-matrix(,nrow = nrow(SecondSubstrateSet),ncol = 1) + + for (i in 1:nrow(SecondSubstrateSet)){ + D835letters<-SecondSubstrateSet[i,4:18] + D835letters<-D835letters[D835letters !="XXXXX"] + D835letters<-paste(D835letters, sep="", collapse="") + leftspaces<-c() + rightspaces<-c() + + YYYmotif <- unlist(strsplit(D835letters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + if (YYYLettersToTheLeft < 7 | YYYLettersToTheRight < 7) { + leftspaces<-rep(" ",times=(7-YYYLettersToTheLeft)) + rightspaces<-rep(" ",times=7-(YYYLettersToTheRight)) + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + D835letters<-motif + D835Ymotifs[i,1]<-D835letters + D835YAccessionNumbers[i,1]<-FirstSubstrateSet[i,3] + } + + if(YYYLettersToTheLeft>6 && YYYLettersToTheRight>6){ + motif<-YYYmotif + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + D835letters<-motif + D835Ymotifs[i,1]<-D835letters + D835YAccessionNumbers[i,1]<-FirstSubstrateSet[i,3] + } + } + + + ITDmotifs=matrix(,nrow = nrow(ThirdSubstrateSet),ncol=1) + ITDAccessionNumbers<-matrix(,nrow = nrow(ThirdSubstrateSet)) + + for (i in 1:nrow(ThirdSubstrateSet)){ + ITDletters<-ThirdSubstrateSet[i,4:18] + ITDletters<-ITDletters[ITDletters !="XXXXX"] + ITDletters<-paste(ITDletters, sep="", collapse="") + YYYmotif <- unlist(strsplit(ITDletters, split = "")) + leftspaces<-c() + rightspaces<-c() + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + if (YYYLettersToTheLeft < 7 | YYYLettersToTheRight < 7) { + leftspaces<-rep(" ",times=(7-YYYLettersToTheLeft)) + rightspaces<-rep(" ",times=7-(YYYLettersToTheRight)) + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + ITDletters<-motif + ITDmotifs[i,1]<-ITDletters + ITDAccessionNumbers[i,1]<-FirstSubstrateSet[i,3] + } + + if(YYYLettersToTheLeft>6 && YYYLettersToTheRight>6){ + motif<-YYYmotif + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + ITDletters<-motif + ITDmotifs[i,1]<-ITDletters + ITDAccessionNumbers[i,1]<-FirstSubstrateSet[i,3] + } + } + + } + ############################################################################################################################# + ############################################################################################################################# + ############################################################################################################################# + ############################################################################################################################# + ############################################################################################################################# + + #now look for either commonality or difference. Actually could you look for both... + + if (Are_You_Looking_For_Commonality=="YES"){ + + columnalheader<-c(as.character(Thirdsubbackfreq[1:36,1])) + columnalheader<-matrix(columnalheader,nrow = 1) + # write.table(x=columnalheader, + # file=Shared_subbackfreq_table, + # quote=FALSE, sep=",", + # row.names=FALSE,col.names = FALSE, na="", append=TRUE) + + FirstOverlapmotifs<-c() + for (i in 1:nrow(ITDmotifs)){ + for (j in 1:nrow(D835Ymotifs)){ + if (is.na(ITDmotifs[i,1])!=TRUE&&is.na(D835Ymotifs[j,1])!=TRUE){ + if (ITDmotifs[i,1]==D835Ymotifs[j,1]){ + FirstOverlapmotifs<-c(FirstOverlapmotifs,D835Ymotifs[j,1]) + } + } + } + } + + AllAccessionNumbers<-c() + columnalheader<-c(rep(NA,36)) + FinalMatrix<-matrix(data =columnalheader,nrow = 1) + + FinalMotifs<-c(rep(NA,20)) + FinalMotifsMatrix<-matrix(data = FinalMotifs,nrow = 1) + + + for (l in 1:length(FirstOverlapmotifs)) { + AccessionNumber<-00000000000 + for (k in 1:nrow(FTLwtmotifs)) { + AccessionNumber<-0000000000000 + if(is.na(FTLwtmotifs[k])!=TRUE){ + #I don't remember why, but I felt it necessary to destroy the accession number multiple times to ensure it is + #destroyed immediately after use + if (FirstOverlapmotifs[l] == FTLwtmotifs[k]) { + substratematrix<-FirstSubstrateSet[k,1:20] + substratematrix<-as.matrix(substratematrix,nrow=1) + FinalMotifsMatrix<-rbind(FinalMotifsMatrix,substratematrix) + #when you find a match between the venn diagrams, save the substrate info you get into a matrix + + AccessionNumber <- as.character(FirstSubstrateSet[k, 3]) + #then take the accession number + + for (m in 1:ncol(Firstsubbackfreq)) { + AN <- as.character(Firstsubbackfreq[1, m]) + if (grepl(pattern = AN, + x = AccessionNumber, + fixed = TRUE) == TRUE) { + outputmatrix <- as.character(Firstsubbackfreq[, m]) + outputmatrix <- matrix(outputmatrix, nrow = 1) + #with that accession number, find a match in the subbackfreq file and save it here + FinalMatrix<-rbind(FinalMatrix,outputmatrix) + } + } + } + } + } + } + + + TrueMatrix<-FinalMatrix[!duplicated(FinalMatrix),] + TrueFinalMotifsMatrix<-FinalMotifsMatrix[!duplicated(FinalMotifsMatrix),] + + TrueFinalMotifsMatrix<-TrueFinalMotifsMatrix[2:nrow(TrueFinalMotifsMatrix),] + TrueMatrix<-TrueMatrix[2:nrow(TrueMatrix),] + + write.table( + x = TrueFinalMotifsMatrix, + file = Shared_motifs_table, + quote = FALSE, + sep = ",", + row.names = FALSE, + col.names = TRUE, + na = "", + append = FALSE + ) + + #TrueMatrix<-t(TrueMatrix) + columnalheader<-c(as.character(Thirdsubbackfreq[1:36,1])) + columnalheader<-matrix(columnalheader,nrow = 1) + + TrueMatrix<-rbind(columnalheader,TrueMatrix) + TrueMatrix<-t(TrueMatrix) + + write.table( + x = TrueMatrix, + file = Shared_subbackfreq_table, + quote = FALSE, + sep = ",", + row.names = FALSE, + col.names = FALSE, + na = "", + append = TRUE + ) + } +} + +if (Are_You_Looking_For_Commonality=="NO"){ + if (FullMotifsOnly_questionmark=="YES"){ + FTLwtmotifs=rep(NA,times=nrow(FirstSubstrateSet)) + FTLwtAccessionNumbers=rep(NA,times=nrow(FirstSubstrateSet)) + leftspaces<-c() + rightspaces<-c() + for (i in 1:nrow(FirstSubstrateSet)){ + FTLwtletters<-FirstSubstrateSet[i,4:18] + FTLwtletters<-FTLwtletters[FTLwtletters !="XXXXX"] + FTLwtletters<-paste(FTLwtletters, sep="", collapse="") + + + YYYmotif <- unlist(strsplit(FTLwtletters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + + if (YYYLettersToTheLeft > 6 && YYYLettersToTheRight > 6) { + motif<-YYYmotif + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + FTLwtletters<-motif + FTLwtmotifs[i]<-FTLwtletters + FTLwtAccessionNumbers[i]<-FirstSubstrateSet[i,3] + } + + } + # FTLwtmotifs <- FTLwtmotifs[!is.na(FTLwtmotifs)] + # FTLwtmotifs<-matrix(FTLwtmotifs,ncol = 1) + # + + D835Ymotifs=rep(NA,times=nrow(FirstSubstrateSet)) + D835YAccessionNumbers=rep(NA,times=nrow(FirstSubstrateSet)) + + for (i in 1:nrow(SecondSubstrateSet)){ + D835letters<-SecondSubstrateSet[i,4:18] + D835letters<-D835letters[D835letters !="XXXXX"] + D835letters<-paste(D835letters, sep="", collapse="") + + + YYYmotif <- unlist(strsplit(D835letters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + + if (YYYLettersToTheLeft > 6 && YYYLettersToTheRight > 6) { + motif<-YYYmotif + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + D835letters<-motif + D835Ymotifs[i]<-D835letters + D835YAccessionNumbers[i]<-SecondSubstrateSet[i,3] + } + } + + ITDmotifs=rep(NA,times=nrow(FirstSubstrateSet)) + ITDAccessionNumbers=rep(NA,times=nrow(FirstSubstrateSet)) + + for (i in 1:nrow(ThirdSubstrateSet)){ + ITDletters<-ThirdSubstrateSet[i,4:18] + ITDletters<-ITDletters[ITDletters !="XXXXX"] + ITDletters<-paste(ITDletters, sep="", collapse="") + YYYmotif <- unlist(strsplit(ITDletters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + + if (YYYLettersToTheLeft > 6 && YYYLettersToTheRight > 6) { + motif<-YYYmotif + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + ITDletters<-motif + ITDmotifs[i]<-ITDletters + ITDAccessionNumbers[i]<-ThirdSubstrateSet[i,3] + + } + } + names(ITDmotifs)<-ITDAccessionNumbers + names(D835Ymotifs)<-D835YAccessionNumbers + names(FTLwtmotifs)<-FTLwtAccessionNumbers + } + + + ##############################################3 + #Truncated only + if (TruncatedMotifsOnly_questionmark=="YES"){ + FTLwtmotifs=matrix(,nrow = nrow(FirstSubstrateSet),ncol=1) + FTLwtAccessionNumbers=matrix(,nrow = nrow(FirstSubstrateSet),ncol=1) + + for (i in 1:nrow(FirstSubstrateSet)){ + FTLwtletters<-FirstSubstrateSet[i,4:18] + FTLwtletters<-FTLwtletters[FTLwtletters !="XXXXX"] + FTLwtletters<-paste(FTLwtletters, sep="", collapse="") + + + YYYmotif <- unlist(strsplit(FTLwtletters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + + if (YYYLettersToTheLeft < 7 | YYYLettersToTheRight < 7) { + leftspaces<-rep(" ",times=(7-YYYLettersToTheLeft)) + rightspaces<-rep(" ",times=7-(YYYLettersToTheRight)) + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + FTLwtletters<-motif + FTLwtmotifs[i,1]<-FTLwtletters + FTLwtAccessionNumbers[i,1]<-FirstSubstrateSet[i,3] + } + + } + + D835Ymotifs=matrix(,nrow = nrow(SecondSubstrateSet),ncol=1) + D835YAccessionNumbers<-matrix(,nrow = nrow(SecondSubstrateSet),ncol = 1) + i=2 + for (i in 1:nrow(SecondSubstrateSet)){ + D835letters<-SecondSubstrateSet[i,4:18] + D835letters<-D835letters[D835letters !="XXXXX"] + D835letters<-paste(D835letters, sep="", collapse="") + + + YYYmotif <- unlist(strsplit(D835letters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + + if (YYYLettersToTheLeft < 7 | YYYLettersToTheRight < 7) { + leftspaces<-rep(" ",times=(7-YYYLettersToTheLeft)) + rightspaces<-rep(" ",times=7-(YYYLettersToTheRight)) + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + D835letters<-motif + D835YAccessionNumbers[i,1]<-SecondSubstrateSet[i,3] + D835Ymotifs[i,1]<-D835letters + } + } + + ITDmotifs=matrix(,nrow = nrow(ThirdSubstrateSet),ncol=1) + ITDAccessionNumbers<-matrix(,nrow = nrow(ThirdSubstrateSet)) + + for (i in 1:nrow(ThirdSubstrateSet)){ + ITDletters<-ThirdSubstrateSet[i,4:18] + ITDletters<-ITDletters[ITDletters !="XXXXX"] + ITDletters<-paste(ITDletters, sep="", collapse="") + YYYmotif <- unlist(strsplit(ITDletters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + + if (YYYLettersToTheLeft < 7 | YYYLettersToTheRight < 7) { + leftspaces<-rep(" ",times=(7-YYYLettersToTheLeft)) + rightspaces<-rep(" ",times=7-(YYYLettersToTheRight)) + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + ITDletters<-motif + ITDAccessionNumbers[i,1]<-ThirdSubstrateSet[i,3] + ITDmotifs[i,1]<-ITDletters + } + } + names(FTLwtmotifs)<-FTLwtAccessionNumbers + names(D835Ymotifs)<-D835YAccessionNumbers + names(ITDmotifs)<-ITDAccessionNumbers + } + + ############################################### + #ALL motifs, full and truncated + + if (FullMotifsOnly_questionmark!="YES"&&TruncatedMotifsOnly_questionmark!="YES"){ + FTLwtmotifs=matrix(,nrow = nrow(FirstSubstrateSet),ncol=1) + FTLwtAccessionNumbers=matrix(,nrow = nrow(FirstSubstrateSet),ncol=1) + + for (i in 1:nrow(FirstSubstrateSet)){ + FTLwtletters<-FirstSubstrateSet[i,4:18] + FTLwtletters<-FTLwtletters[FTLwtletters !="XXXXX"] + FTLwtletters<-paste(FTLwtletters, sep="", collapse="") + leftspaces<-c() + rightspaces<-c() + + YYYmotif <- unlist(strsplit(FTLwtletters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + + + if (YYYLettersToTheLeft < 7 | YYYLettersToTheRight < 7) { + leftspaces<-rep(" ",times=(7-YYYLettersToTheLeft)) + rightspaces<-rep(" ",times=7-(YYYLettersToTheRight)) + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + FTLwtletters<-motif + FTLwtmotifs[i,1]<-FTLwtletters + FTLwtAccessionNumbers[i,1]<-FirstSubstrateSet[i,3] + } + + if(YYYLettersToTheLeft>6 && YYYLettersToTheRight>6){ + motif<-YYYmotif + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + FTLwtletters<-motif + FTLwtmotifs[i,1]<-FTLwtletters + FTLwtAccessionNumbers[i,1]<-FirstSubstrateSet[i,3] + + + } + + } + + D835Ymotifs=matrix(,nrow = nrow(SecondSubstrateSet),ncol=1) + D835YAccessionNumbers<-matrix(,nrow = nrow(SecondSubstrateSet),ncol = 1) + + for (i in 1:nrow(SecondSubstrateSet)){ + D835letters<-SecondSubstrateSet[i,4:18] + D835letters<-D835letters[D835letters !="XXXXX"] + D835letters<-paste(D835letters, sep="", collapse="") + leftspaces<-c() + rightspaces<-c() + + YYYmotif <- unlist(strsplit(D835letters, split = "")) + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + if (YYYLettersToTheLeft < 7 | YYYLettersToTheRight < 7) { + leftspaces<-rep(" ",times=(7-YYYLettersToTheLeft)) + rightspaces<-rep(" ",times=7-(YYYLettersToTheRight)) + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + D835letters<-motif + D835Ymotifs[i,1]<-D835letters + D835YAccessionNumbers[i,1]<-FirstSubstrateSet[i,3] + } + + if(YYYLettersToTheLeft>6 && YYYLettersToTheRight>6){ + motif<-YYYmotif + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + D835letters<-motif + D835Ymotifs[i,1]<-D835letters + D835YAccessionNumbers[i,1]<-FirstSubstrateSet[i,3] + } + } + + + ITDmotifs=matrix(,nrow = nrow(ThirdSubstrateSet),ncol=1) + ITDAccessionNumbers<-matrix(,nrow = nrow(ThirdSubstrateSet)) + + for (i in 1:nrow(ThirdSubstrateSet)){ + ITDletters<-ThirdSubstrateSet[i,4:18] + ITDletters<-ITDletters[ITDletters !="XXXXX"] + ITDletters<-paste(ITDletters, sep="", collapse="") + YYYmotif <- unlist(strsplit(ITDletters, split = "")) + leftspaces<-c() + rightspaces<-c() + YYYposition <- match(x = "x", table = YYYmotif) + #position itself tells me how much is to the left of that X by what it's number is. x at position 4 tells me that there are + #just 3 letters to the left of x + + YYYLettersToTheLeft <- YYYposition - 1 + #how many letters to the right SHOULD just be length(motif)-position-1 if it's 5 long and x is at 3 then Y is at 4 and there is + #just 1 spot to the right of Y so LettersToTheRight<-1 because 5-3-1=1 + YYYLettersToTheRight <- length(YYYmotif) - YYYposition - 1 + #then sanity check, we're currently looking only at +/-4, but this spot allows for up to +/- 7 as well, just depends on what the + #variable the user puts in is + if (YYYLettersToTheLeft < 7 | YYYLettersToTheRight < 7) { + leftspaces<-rep(" ",times=(7-YYYLettersToTheLeft)) + rightspaces<-rep(" ",times=7-(YYYLettersToTheRight)) + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + ITDletters<-motif + ITDmotifs[i,1]<-ITDletters + ITDAccessionNumbers[i,1]<-FirstSubstrateSet[i,3] + } + + if(YYYLettersToTheLeft>6 && YYYLettersToTheRight>6){ + motif<-YYYmotif + #add blank spaces if the motif has less than 4 letters to the left/right + motif<-c(leftspaces,YYYmotif,rightspaces) + #save that motif, which is the Y and +/- 4 amino acids, including truncation + motif<-motif[!motif %in% "x"] + motif<-paste(motif, sep="", collapse="") + ITDletters<-motif + ITDmotifs[i,1]<-ITDletters + ITDAccessionNumbers[i,1]<-FirstSubstrateSet[i,3] + } + } + names(FTLwtmotifs)<-FTLwtAccessionNumbers + names(D835Ymotifs)<-D835YAccessionNumbers + names(ITDmotifs)<-ITDAccessionNumbers + } + + + FTLwtmotifsFINAL<-FTLwtmotifs[!FTLwtmotifs %in% D835Ymotifs] + FTLwtmotifsFINAL<-FTLwtmotifsFINAL[!FTLwtmotifsFINAL %in% ITDmotifs] + FTLwtmotifsFINAL<-FTLwtmotifsFINAL[!duplicated(FTLwtmotifsFINAL)] + + + ITDmotifsFINAL<-ITDmotifs[!ITDmotifs %in% D835Ymotifs] + ITDmotifsFINAL<-ITDmotifsFINAL[!ITDmotifsFINAL %in% FTLwtmotifs] + ITDmotifsFINAL<-ITDmotifsFINAL[!duplicated(ITDmotifsFINAL)] + + + D835YmotifsFINAL<-D835Ymotifs[!D835Ymotifs %in% FTLwtmotifs] + D835YmotifsFINAL<-D835YmotifsFINAL[!D835YmotifsFINAL %in% ITDmotifs] + D835YmotifsFINAL<-D835YmotifsFINAL[!duplicated(D835YmotifsFINAL)] + + + columnalheader<-c(rep(NA,36)) + FTLFinalMatrix<-matrix(data =columnalheader,nrow = 1) + + for (k in 1:length(FTLwtmotifsFINAL)) { + AN<-00000 + #I don't remember why, but I felt it necessary to destroy the accession number multiple times to ensure it is + #destroyed immediately after use + for (m in 1:ncol(Firstsubbackfreq)) { + AN <- as.character(Firstsubbackfreq[1, m]) + if (grepl(pattern = AN, + x = names(FTLwtmotifsFINAL[k]), + fixed = TRUE) == TRUE) { + outputmatrix <- as.character(Firstsubbackfreq[, m]) + outputmatrix <- matrix(outputmatrix, nrow = 1) + #with that accession number, find a match in the subbackfreq file and save it here + FTLFinalMatrix<-rbind(FTLFinalMatrix,outputmatrix) + } + } + } + FTLFinalMatrix<-FTLFinalMatrix[!duplicated(FTLFinalMatrix),] + + columnalheader<-c(rep(NA,36)) + ITDFinalMatrix<-matrix(data =columnalheader,nrow = 1) + + for (k in 1:length(ITDmotifsFINAL)) { + AN<-00000 + #I don't remember why, but I felt it necessary to destroy the accession number multiple times to ensure it is + #destroyed immediately after use + for (m in 1:ncol(Thirdsubbackfreq)) { + AN <- as.character(Thirdsubbackfreq[1, m]) + if (grepl(pattern = AN, + x = names(ITDmotifsFINAL[k]), + fixed = TRUE) == TRUE) { + outputmatrix <- as.character(Thirdsubbackfreq[, m]) + outputmatrix <- matrix(outputmatrix, nrow = 1) + #with that accession number, find a match in the subbackfreq file and save it here + ITDFinalMatrix<-rbind(ITDFinalMatrix,outputmatrix) + } + } + } + ITDFinalMatrix<-ITDFinalMatrix[!duplicated(ITDFinalMatrix),] + + columnalheader<-c(rep(NA,36)) + D835YFinalMatrix<-matrix(data =columnalheader,nrow = 1) + + for (k in 1:length(D835YmotifsFINAL)) { + #I don't remember why, but I felt it necessary to destroy the accession number multiple times to ensure it is + #destroyed immediately after use + for (m in 1:ncol(Secondsubbackfreq)) { + AN <- as.character(Secondsubbackfreq[1, m]) + if (grepl(pattern = AN, + x = names(D835YmotifsFINAL[k]), + fixed = TRUE) == TRUE) { + outputmatrix <- as.character(Secondsubbackfreq[, m]) + outputmatrix <- matrix(outputmatrix, nrow = 1) + #with that accession number, find a match in the subbackfreq file and save it here + D835YFinalMatrix<-rbind(D835YFinalMatrix,outputmatrix) + } + } + } + D835YFinalMatrix<-D835YFinalMatrix[!duplicated(D835YFinalMatrix),] + + FTLoutputmatrix<-matrix(data=c(FTLwtmotifsFINAL,names(FTLwtmotifsFINAL)),ncol = 2) + + #another fucking for loop + FLTreference<-FTLoutputmatrix[,2] + + FirstLine<-colnames(FirstSubstrateSet) + FirstLine<-FirstLine[1:23] + for (q in 1:nrow(FTLoutputmatrix)) { + thismotif<-unlist(strsplit(FTLoutputmatrix[q,1],"")) + thisoutput<-c("","",FTLoutputmatrix[q,2],thismotif,"","","","","") + FirstLine<-rbind(FirstLine,thisoutput) + } + + + + write.table(x=FirstLine, + file=First_unshared_motifs_table, + quote=FALSE, sep=",", + row.names=FALSE,col.names = FALSE, na="", append=TRUE) + + columnalheader<-c(as.character(Thirdsubbackfreq[1:36,1])) + columnalheader<-matrix(columnalheader,nrow = 1) + + # columnalheader<-rbind(columnalheader,FTLFinalMatrix) + + write.table(x=columnalheader, + file=First_unshared_subbackfreq, + quote=FALSE, sep=",", + row.names=FALSE,col.names = FALSE, na="", append=TRUE) + + write.table(x=FTLFinalMatrix[2:nrow(FTLFinalMatrix),], + file=First_unshared_subbackfreq, + quote=FALSE, sep=",", + row.names=FALSE,col.names = FALSE, na="", append=TRUE) + + ############################################################################################################ + + D835Youtputmatrix<-matrix(data=c(D835YmotifsFINAL,names(D835YmotifsFINAL)),ncol = 2) + + FLTreference<-D835Youtputmatrix[,2] + + FirstLine<-colnames(FirstSubstrateSet) + FirstLine<-FirstLine[1:23] + for (q in 1:nrow(D835Youtputmatrix)) { + thismotif<-unlist(strsplit(D835Youtputmatrix[q,1],"")) + thisoutput<-c("","",D835Youtputmatrix[q,2],thismotif,"","","","","") + FirstLine<-rbind(FirstLine,thisoutput) + } + + + + write.table(x=FirstLine, + file=Second_unshared_motifs_table, + quote=FALSE, sep=",", + row.names=FALSE,col.names = FALSE, na="", append=TRUE) + + columnalheader<-c(as.character(Thirdsubbackfreq[1:36,1])) + columnalheader<-matrix(columnalheader,nrow = 1) + + # columnalheader<-rbind(columnalheader,D835YFinalMatrix) + + write.table(x=columnalheader, + file=Second_unshared_subbackfreq, + quote=FALSE, sep=",", + row.names=FALSE,col.names = FALSE, na="", append=TRUE) + + write.table(x=D835YFinalMatrix[2:nrow(D835YFinalMatrix),], + file=Second_unshared_subbackfreq, + quote=FALSE, sep=",", + row.names=FALSE,col.names = FALSE, na="", append=TRUE) + + ############################################################################################################ + + ITDoutputmatrix<-matrix(data = c(ITDmotifsFINAL,names(ITDmotifsFINAL)),ncol = 2) + + FLTreference<-ITDoutputmatrix[,2] + + FirstLine<-colnames(FirstSubstrateSet) + FirstLine<-FirstLine[1:23] + for (q in 1:nrow(ITDoutputmatrix)) { + thismotif<-unlist(strsplit(ITDoutputmatrix[q,1],"")) + thisoutput<-c("","",ITDoutputmatrix[q,2],thismotif,"","","","","") + FirstLine<-rbind(FirstLine,thisoutput) + } + + + write.table(x=FirstLine, + file=Third_unshared_motifs_table, + quote=FALSE, sep=",", + row.names=FALSE,col.names = FALSE, na="", append=TRUE) + + columnalheader<-c(as.character(Thirdsubbackfreq[1:36,1])) + columnalheader<-matrix(columnalheader,nrow = 1) + + # columnalheader<-rbind(columnalheader,ITDFinalMatrix) + + write.table(x=columnalheader, + file=Third_unshared_subbackfreq, + quote=FALSE, sep=",", + row.names=FALSE,col.names = FALSE, na="", append=TRUE) + + write.table(x=ITDFinalMatrix[2:nrow(ITDFinalMatrix),], + file=Third_unshared_subbackfreq, + quote=FALSE, sep=",", + row.names=FALSE,col.names = FALSE, na="", append=TRUE) + +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/C and D finder/CandD.xml Tue May 22 18:17:33 2018 -0400 @@ -0,0 +1,53 @@ +<tool id="kinamine_java" name="Negative-Motif-Finder 7_to_7" version="1.0.0"> + <description>discover unphosphorylated substrates</description> + <requirements> + <requirement type="package">R</requirement> + </requirements> + <command><![CDATA[ + Rscript '$__tool_directory__/CandD.R' + ]]></command> + <inputs> + <param format="csv" name="input1.csv" type="data" label="First Substrate Set"/> + <param format="csv" name="input2.csv" type="data" label="First Substrate Background Frequency"/> + <param format="csv" name="input3.csv" type="data" label="Second Substrate Set"/> + <param format="csv" name="input4.csv" type="data" label="Second Substrate Background Frequency"/> + <param format="csv" name="input5.csv" type="data" label="Substrate Background Frequency"/> + <param format="csv" name="input6.csv" type="data" label="Substrate Background Frequency"/> + </inputs> + <outputs> + <data format="csv" name="Negatives" from_work_dir="output1.csv" label="${outGroup}_Negative Motifs.csv"/> + <data format="csv" name="Negatives" from_work_dir="output1.csv" label="${outGroup}_Negative Motifs.csv"/> + <data format="csv" name="Negatives" from_work_dir="output1.csv" label="${outGroup}_Negative Motifs.csv"/> + <data format="csv" name="Negatives" from_work_dir="output1.csv" label="${outGroup}_Negative Motifs.csv"/> + <data format="csv" name="Negatives" from_work_dir="output1.csv" label="${outGroup}_Negative Motifs.csv"/> + <data format="csv" name="Negatives" from_work_dir="output1.csv" label="${outGroup}_Negative Motifs.csv"/> + </outputs> + <tests> + <test> + <param name="input1.csv" ftype="csv" value="input1.csv"/> + <param name="positives" ftype="csv" value="substrates.csv"/> + <param name="SBF" ftype="csv" value="SBF.csv"/> + <output name="Negatives" file="negatives.csv"/> + </test> + </tests> + <help><![CDATA[ +Using the output from KinaMine, plus the Uniprot file that was used with KinaMine, this program finds all Y-centered motifs which *could* have been present as positive motifs but were not seen by the Mass Spec +This tool is intended to be used in conjunction with KinaMine 7-7 and Kinatest.R, the three together creating a GalaxyP version of the KINATEST-ID workbook. + + +Inputs + +**Substrate Background Frequency** +**Positive/Phosphorylated Substrate List** +These two come directly from the KinaMine output + +**Human Proteome Reference** +This should be a tabularized version of a FASTA taken from the Reviewed Human Uniprot database, consisting of all human proteins plus a list of common Mass Spectrometry contaminants. +This file should be created by using the same FASTA file used for KinaMine and running FASTA to Tabular on it using GalaxyP + + ]]></help> + <citations> + <citation type="doi">10.1021/ja507164a</citation> + </citations> +</tool> +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/C and D finder/test-data/input1.csv Tue May 22 18:17:33 2018 -0400 @@ -0,0 +1,251 @@ +Substrates,Species,Reference,-7,-6,-5,-4,-3,-2,-1,0,1,2,3,4,5,6,7,,,,,Phosphite, +,,sp|P13639|EF2_HUMAN,,,,K,E,D,L,Y,L,K,P,I,Q,R,,,,,KEDLYLKPIQR,PGKKEDLYLKPIQRT, +,,sp|O43390|HNRPR_HUMAN,,,,,,,D,Y,A,F,V,H,F,E,D,,,,DYAFVHFED,RVKKLKDYAFVHFED, +,,sp|P78347|GTF2I_HUMAN,,,,T,V,E,D,Y,F,C,F,C,Y,G,K,,,,TVEDYFCFCYGK,LRKTVEDYFCFCYGK, +,,sp|P62899|RL31_HUMAN,,,,,,,L,Y,T,L,V,T,Y,V,P,,,,LYTLVTYVP,EDSPNKLYTLVTYVP, +,,sp|Q08J23|NSUN2_HUMAN,,L,A,Q,E,G,I,Y,T,L,Y,P,F,I,N,,,,LAQEGIYTLYPFIN,RLAQEGIYTLYPFIN, +,,sp|P60842|IF4A1_HUMAN,,,,,D,Q,I,Y,D,I,F,Q,K,,,,,,DQIYDIFQK,RGFKDQIYDIFQKLN, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,T,V,P,I,Y,E,G,Y,A,L,P,H,A,I,L,,,,TVPIYEGYALPHAIL,TVPIYEGYALPHAIL, +,,sp|Q02790|FKBP4_HUMAN,,G,E,H,S,I,V,Y,L,K,P,S,Y,A,F,,,,GEHSIVYLKPSYAF,KGEHSIVYLKPSYAF, +,,sp|Q9NR30|DDX21_HUMAN,,,,,,S,T,Y,E,Q,V,D,L,I,G,,,,STYEQVDLIG,KKYMKSTYEQVDLIG, +,,sp|P31939|PUR9_HUMAN,,,,,N,G,N,Y,C,V,L,Q,M,D,Q,,,,NGNYCVLQMDQ,SKKKNGNYCVLQMDQ, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,,K,D,L,Y,A,N,T,V,L,S,G,,,,KDLYANTVLSG,VDIRKDLYANTVLSG, +,,sp|P62805|H4_HUMAN,,,I,S,G,L,I,Y,E,E,T,R,,,,,,,ISGLIYEETR,KRISGLIYEETRGVL, +,,sp|P22234|PUR6_HUMAN,,,,,,E,V,Y,E,L,L,D,S,P,G,,,,EVYELLDSPG,EGKTKEVYELLDSPG, +,,sp|P30086|PEBP1_HUMAN,,,,,,,L,Y,E,Q,L,S,G,K,,,,,LYEQLSGK,DDYVPKLYEQLSGK, +,,sp|Q08945|SSRP1_HUMAN,,N,M,S,G,S,L,Y,E,M,V,S,R,,,,,,NMSGSLYEMVSR,KNMSGSLYEMVSRVM, +,,sp|Q9Y3I0|RTCB_HUMAN,G,M,A,A,A,G,N,Y,A,W,V,N,R,,,,,,GMAAAGNYAWVNR,GMAAAGNYAWVNRSS, +,,sp|P52272|HNRPM_HUMAN,N,E,C,G,H,V,L,Y,A,D,I,K,,,,,,,NECGHVLYADIK,NECGHVLYADIKMEN, +,,sp|O75369|FLNB_HUMAN,,,,,D,G,T,Y,A,V,T,Y,I,P,D,,,,DGTYAVTYIPD,HDNKDGTYAVTYIPD, +,,sp|P38919|IF4A3_HUMAN,,,,,E,Q,I,Y,D,V,Y,R,,,,,,,EQIYDVYR,KGFKEQIYDVYRYLP, +,,sp|P10809|CH60_HUMAN,,,G,Y,I,S,P,Y,F,I,N,T,S,K,,,,,GYISPYFINTSK,DRGYISPYFINTSKG, +,,sp|P61254|RL26_HUMAN,,,,K,Y,V,I,Y,I,E,R,,,,,,,,KYVIYIER,YRKKYVIYIERVQRE, +,,sp|P62805|H4_HUMAN,V,T,A,M,D,V,V,Y,A,L,K,,,,,,,,VTAMDVVYALK,VTAMDVVYALKRQGR, +,,sp|P60842|IF4A1_HUMAN,,G,F,K,D,Q,I,Y,D,I,F,Q,K,,,,,,GFKDQIYDIFQK,RGFKDQIYDIFQKLN, +,,sp|Q9BTM1|H2AJ_HUMAN; sp|Q99878|H2A1J_HUMAN; sp|Q96KK5|H2A1H_HUMAN; sp|Q6FI13|H2A2A_HUMAN; sp|Q16777|H2A2C_HUMAN; sp|P0C0S8|H2A1_HUMAN; sp|Q8IUE6|H2A2B_HUMAN,,,,,K,G,N,Y,A,E,R,,,,,,,,KGNYAER,RLLRKGNYAERVGAG, +,,sp|P52565|GDIR1_HUMAN,,,I,D,K,T,D,Y,M,V,G,S,Y,G,P,,,,IDKTDYMVGSYGP,VKIDKTDYMVGSYGP, +,,sp|P08865|RSSA_HUMAN,,,,S,D,G,I,Y,I,I,N,L,K,,,,,,SDGIYIINLK,KRKSDGIYIINLKRT, +,,sp|P54727|RD23B_HUMAN,,,,,A,V,E,Y,L,L,M,G,I,P,G,,,,AVEYLLMGIPG,NPDRAVEYLLMGIPG, +,,sp|O43390|HNRPR_HUMAN,,,,,L,K,D,Y,A,F,V,H,F,E,D,,,,LKDYAFVHFED,RVKKLKDYAFVHFED, +,,sp|Q02543|RL18A_HUMAN,,S,S,G,E,I,V,Y,C,G,Q,V,F,E,K,,,,SSGEIVYCGQVFEK,KSSGEIVYCGQVFEK, +,,sp|P12956|XRCC6_HUMAN,,,,,,N,I,Y,V,L,Q,E,L,D,N,,,,NIYVLQELDN,SVNFKNIYVLQELDN, +,,sp|Q13310|PABP4_HUMAN,,,,,,,G,Y,A,F,V,H,F,E,T,,,,GYAFVHFET,DENGSKGYAFVHFET, +,,sp|Q16881|TRXR1_HUMAN,,,,,S,Y,D,Y,D,L,I,I,I,G,G,,,,SYDYDLIIIGG,DLPKSYDYDLIIIGG, +,,sp|O43390|HNRPR_HUMAN,,,,,S,T,A,Y,E,D,Y,Y,Y,H,P,,,,STAYEDYYYHP,QASRSTAYEDYYYHP, +,,sp|P84090|ERH_HUMAN,,,,,,,I,Y,V,L,L,R,,,,,,,IYVLLR,DWIKEKIYVLLRRQA, +,,sp|Q9UHA4|LTOR3_HUMAN,,,S,I,I,C,Y,Y,N,T,Y,Q,V,V,Q,,,,SIICYYNTYQVVQ,NKSIICYYNTYQVVQ, +,,sp|Q9UHA4|LTOR3_HUMAN,,,,S,I,I,C,Y,Y,N,T,Y,Q,V,V,,,,SIICYYNTYQVV,KNKSIICYYNTYQVV, +,,sp|O76094|SRP72_HUMAN,,,,,,E,L,Y,G,Q,V,L,Y,R,,,,,ELYGQVLYR,TDKLKELYGQVLYRL, +,,sp|Q16778|H2B2E_HUMAN; sp|P23527|H2B1O_HUMAN; sp|P06899|H2B1J_HUMAN; sp|P33778|H2B1B_HUMAN; sp|Q8N257|H2B3B_HUMAN; sp|Q6DRA6|H2B2D_HUMAN; sp|Q6DN03|H2B2C_HUMAN,,K,E,S,Y,S,I,Y,V,Y,K,,,,,,,,KESYSIYVYK,RKESYSIYVYKVLKQ,RKESYSIYVYKVLKR +,,sp|P22626|ROA2_HUMAN,,,,,,N,Y,Y,E,Q,W,G,K,,,,,,NYYEQWGK,EESLRNYYEQWGKLT, +,,sp|O14979|HNRDL_HUMAN,,,,D,L,T,E,Y,L,S,R,,,,,,,,DLTEYLSR,SKKDLTEYLSRFGEV, +,,sp|P09211|GSTP1_HUMAN; sp|GSTP1_HUMAN,,,,,,,P,Y,T,V,V,Y,F,P,V,,,,PYTVVYFPV,MPPYTVVYFPV,PPYTVVYFPV +,,sp|Q13263|TIF1B_HUMAN,P,G,S,T,T,E,D,Y,N,L,I,V,I,E,R,,,,PGSTTEDYNLIVIER,PGSTTEDYNLIVIER, +,,sp|P07948|LYN_HUMAN,,,,,,,L,Y,A,V,V,T,R,,,,,,LYAVVTR,HDKLVRLYAVVTREE, +,,sp|P11021|BIP_HUMAN,,,,K,T,K,P,Y,I,Q,V,D,I,G,G,,,,KTKPYIQVDIGG,VEKKTKPYIQVDIGG, +,,sp|P49321|NASP_HUMAN,,,,E,A,Q,L,Y,A,A,Q,A,H,L,K,,,,EAQLYAAQAHLK,ETKEAQLYAAQAHLK, +,,sp|P19105|ML12A_HUMAN; sp|O14950|ML12B_HUMAN,,,,G,N,F,N,Y,I,E,F,T,R,,,,,,GNFNYIEFTR,DKKGNFNYIEFTRIL, +,,sp|Q8TDN6|BRX1_HUMAN,,,K,K,Q,D,L,Y,M,W,L,S,N,S,P,,,,KKQDLYMWLSNSP,AKKKQDLYMWLSNSP, +,,sp|P07900|HS90A_HUMAN,,,,,,H,I,Y,Y,I,T,G,E,T,K,,,,HIYYITGETK,KENQKHIYYITGETK, +,,sp|P30086|PEBP1_HUMAN,,,,,,,L,Y,T,L,V,L,T,D,P,,,,LYTLVLTDP,GLDSGKLYTLVLTDP, +,,sp|P61254|RL26_HUMAN,,,,,Y,V,I,Y,I,E,R,,,,,,,,YVIYIER,YRKKYVIYIERVQRE, +,,sp|P62805|H4_HUMAN,V,T,A,M,D,V,V,Y,A,L,K,R,,,,,,,VTAMDVVYALKR,VTAMDVVYALKRQGR, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,,,,G,Y,S,F,T,T,T,A,E,,,,GYSFTTTAE,KILTERGYSFTTTAE, +,,sp|P00558|PGK1_HUMAN,,,,L,G,D,V,Y,V,N,D,A,F,G,T,,,,LGDVYVNDAFGT,LSKLGDVYVNDAFGT, +,,sp|P19338|NUCL_HUMAN,,,,,,,G,Y,A,F,I,E,F,A,S,,,,GYAFIEFAS,QNGKSKGYAFIEFAS, +,,sp|Q9BXJ9|NAA15_HUMAN,,,,K,E,E,A,Y,E,L,V,R,,,,,,,KEEAYELVR,LGKKEEAYELVRRGL, +,,sp|P07195|LDHB_HUMAN,,M,V,V,E,S,A,Y,E,V,I,K,,,,,,,MVVESAYEVIK,KMVVESAYEVIKLKG, +,,sp|P36896|ACV1B_HUMAN; sp|Q8NER5|ACV1C_HUMAN; sp|P36897|TGFR1_HUMAN,,,,E,A,E,I,Y,Q,T,V,M,L,R,,,,,EAEIYQTVMLR,WFREAEIYQTVMLRH, +,,sp|P11940|PABP1_HUMAN,,,,,,Q,I,Y,V,G,R,,,,,,,,QIYVGR,ELNGKQIYVGRAQKK, +,,sp|O60506|HNRPQ_HUMAN,,,,,,,G,Y,A,F,V,T,F,C,T,,,,GYAFVTFCT,LTGLNRGYAFVTFCT, +,,sp|Q9UGN4|CLM8_HUMAN,,,,E,E,L,H,Y,A,S,V,V,F,D,S,,,,EELHYASVVFDS,SPREELHYASVVFDS, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,,,D,L,Y,A,N,T,V,L,S,G,,,,DLYANTVLSG,VDIRKDLYANTVLSG, +,,sp|P50395|GDIB_HUMAN,,,,K,S,D,I,Y,V,C,M,I,S,F,A,,,,KSDIYVCMISFA,VNRKSDIYVCMISFA, +,,sp|Q07666|KHDR1_HUMAN,,K,D,D,E,E,N,Y,L,D,L,F,S,H,K,,,,KDDEENYLDLFSHK,KKDDEENYLDLFSHK, +,,sp|P55060|XPO2_HUMAN,,H,K,D,A,A,I,Y,L,V,T,S,L,A,S,,,,HKDAAIYLVTSLAS,KHKDAAIYLVTSLAS, +,,sp|P13796|PLSL_HUMAN,,,,,,,,Y,A,F,V,N,W,I,N,,,,YAFVNWIN,SYSEEEKYAFVNWIN, +,,sp|P14625|ENPL_HUMAN,,,D,I,S,T,N,Y,Y,A,S,Q,K,,,,,,DISTNYYASQK,GKDISTNYYASQKKT, +,,sp|Q01469|FABP5_HUMAN,,,,,,,I,Y,E,K,V,E,,,,,,,IYEKVE,NVTCTRIYEKVE, +,,sp|Q9UM73|ALK_HUMAN,M,E,L,Q,S,P,E,Y,K,L,S,K,,,,,,,MELQSPEYKLSK,MELQSPEYKLSKLRT, +,,sp|Q16531|DDB1_HUMAN,,,,,G,A,V,Y,S,M,V,E,F,N,G,,,,GAVYSMVEFNG,KEVKGAVYSMVEFNG, +,,sp|P26599|PTBP1_HUMAN,S,L,D,G,Q,N,I,Y,N,A,C,C,T,L,R,,,,SLDGQNIYNACCTLR,SLDGQNIYNACCTLR, +,,sp|P11940|PABP1_HUMAN; sp|Q13310|PABP4_HUMAN,,,,R,S,L,G,Y,A,Y,V,N,F,Q,Q,,,,RSLGYAYVNFQQ,ITRRSLGYAYVNFQQ, +,,sp|Q9HC35|EMAL4_HUMAN,I,I,N,Q,E,G,E,Y,I,K,,,,,,,,,IINQEGEYIK,IINQEGEYIKMFMRG, +,,sp|Q5R372|RBG1L_HUMAN,T,N,A,G,D,A,I,Y,E,V,V,S,L,Q,R,,,,TNAGDAIYEVVSLQR,TNAGDAIYEVVSLQR, +,,sp|Q02880|TOP2B_HUMAN,,H,F,D,G,E,D,Y,T,C,I,T,F,Q,P,,,,HFDGEDYTCITFQP,KHFDGEDYTCITFQP, +,,sp|P68104|EF1A1_HUMAN; sp|Q5VTE0|EF1A3_HUMAN,,,,,,,,Y,Y,V,T,I,I,D,A,,,,YYVTIIDA,WKFETSKYYVTIIDA, +,,sp|P52788|SPSY_HUMAN,,,,,,,L,Y,C,P,V,E,F,S,K,,,,LYCPVEFSK,EEQLGRLYCPVEFSK, +,,sp|P08238|HS90B_HUMAN,,,,,,,F,Y,E,A,F,S,K,,,,,,FYEAFSK,KENYKKFYEAFSKNL, +,,sp|P62750|RL23A_HUMAN,,,,,L,D,H,Y,A,I,I,K,,,,,,,LDHYAIIK,RRNKLDHYAIIKFPL, +,,sp|Q96PK6|RBM14_HUMAN,A,G,Q,P,S,A,A,Y,L,S,M,S,Q,G,A,,,,AGQPSAAYLSMSQGA,AGQPSAAYLSMSQGA, +,,sp|P08238|HS90B_HUMAN,D,D,I,T,Q,E,E,Y,G,E,F,Y,K,,,,,,DDITQEEYGEFYK,DDITQEEYGEFYKSL, +,,sp|Q96PK6|RBM14_HUMAN,,,,,,,D,Y,A,F,V,H,M,E,K,,,,DYAFVHMEK,ECDVVKDYAFVHMEK, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN; sp|Q6S8J3|POTEE_HUMAN,,,,,,L,C,Y,V,A,L,D,F,E,Q,,,,LCYVALDFEQ,DIKEKLCYVALDFEQ, +,,sp|P11940|PABP1_HUMAN,,,,,,,G,Y,G,F,V,H,F,E,T,,,,GYGFVHFET,DENGSKGYGFVHFET, +,,sp|P54136|SYRC_HUMAN,,,,,,,A,Y,Q,C,V,V,L,L,Q,,,,AYQCVVLLQ,EEFKKRAYQCVVLLQ, +,,sp|Q14240|IF4A2_HUMAN,,,,,D,Q,I,Y,E,I,F,Q,K,,,,,,DQIYEIFQK,RGFKDQIYEIFQKLN, +,,sp|P62917|RL8_HUMAN,,,,A,S,G,N,Y,A,T,V,I,S,H,N,,,,ASGNYATVISHN,LARASGNYATVISHN, +,,sp|P34932|HSP74_HUMAN,,,,S,N,L,A,Y,D,I,V,Q,L,P,T,,,,SNLAYDIVQLPT,AEKSNLAYDIVQLPT, +,,sp|P15144|AMPN_HUMAN,E,L,V,E,P,T,E,Y,L,V,V,H,L,K,,,,,ELVEPTEYLVVHLK,ELVEPTEYLVVHLKG, +,,sp|P06733|ENOA_HUMAN,S,G,A,S,T,G,I,Y,E,A,L,E,L,R,D,,,,SGASTGIYEALELRD,SGASTGIYEALELRD, +,,sp|P62987|RL40_HUMAN; sp|P62979|RS27A_HUMAN; sp|P0CG47|UBB_HUMAN; sp|P0CG47|UBB_HUMAN; sp|P0CG47|UBB_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN,,,,T,L,S,D,Y,N,I,Q,K,,,,,,,TLSDYNIQK,DGRTLSDYNIQKEST, +,,sp|P50395|GDIB_HUMAN,,,,,S,D,I,Y,V,C,M,I,S,F,A,,,,SDIYVCMISFA,VNRKSDIYVCMISFA, +,,sp|P13639|EF2_HUMAN,,,,,,C,L,Y,A,S,V,L,T,A,Q,,,,CLYASVLTAQ,PTARRCLYASVLTAQ, +,,sp|P62195|PRS8_HUMAN,,,V,P,D,S,T,Y,E,M,I,G,G,L,D,,,,VPDSTYEMIGGLD,EKVPDSTYEMIGGLD, +,,sp|P48444|COPD_HUMAN,,,,,,,N,Y,C,N,I,Q,V,T,K,,,,NYCNIQVTK,SFVSKKNYCNIQVTK, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,V,T,H,T,V,P,I,Y,E,G,Y,A,L,P,H,,,,VTHTVPIYEGYALPH,VTHTVPIYEGYALPH, +,,sp|Q14699|RFTN1_HUMAN,,,,,,,Q,Y,Y,P,V,T,I,P,L,,,,QYYPVTIPL,SHQKCRQYYPVTIPL, +,,sp|P31939|PUR9_HUMAN,,,K,K,N,G,N,Y,C,V,L,Q,M,D,Q,,,,KKNGNYCVLQMDQ,SKKKNGNYCVLQMDQ, +,,sp|P26196|DDX6_HUMAN,,,G,V,T,Q,Y,Y,A,Y,V,T,E,R,,,,,GVTQYYAYVTER,LKGVTQYYAYVTERQ, +,,sp|P11586|C1TC_HUMAN,,,D,D,S,N,L,Y,I,N,V,K,,,,,,,DDSNLYINVK,NRDDSNLYINVKLKA, +,,sp|Q9UM73|ALK_HUMAN,H,G,A,F,G,E,V,Y,E,G,Q,V,S,G,M,,,,HGAFGEVYEGQVSGM,HGAFGEVYEGQVSGM, +,,sp|P22234|PUR6_HUMAN,,,,T,K,E,V,Y,E,L,L,D,S,P,G,,,,TKEVYELLDSPG,EGKTKEVYELLDSPG, +,,sp|P68104|EF1A1_HUMAN; sp|Q5VTE0|EF1A3_HUMAN,,E,H,A,L,L,A,Y,T,L,G,V,K,,,,,,EHALLAYTLGVK,REHALLAYTLGVKQL, +,,sp|O75368|SH3L1_HUMAN,,,E,N,N,A,V,Y,A,F,L,G,L,T,A,,,,ENNAVYAFLGLTA,ARENNAVYAFLGLTA, +,,sp|P68104|EF1A1_HUMAN; sp|Q5VTE0|EF1A3_HUMAN,,,,,,,Y,Y,V,T,I,I,D,A,P,,,,YYVTIIDAP,KFETSKYYVTIIDAP, +,,sp|P09211|GSTP1_HUMAN,,,,,M,P,P,Y,T,V,V,Y,F,P,V,,,,MPPYTVVYFPV,MPPYTVVYFPV, +,,sp|Q9BUQ8|DDX23_HUMAN,E,E,S,D,Q,G,P,Y,A,I,I,L,A,P,T,,,,EESDQGPYAIILAPT,EESDQGPYAIILAPT, +,,sp|P61158|ARP3_HUMAN,,,,,,K,D,Y,E,E,I,G,P,S,I,,,,KDYEEIGPSI,VCHTKKDYEEIGPSI, +,,sp|P39656|OST48_HUMAN,,,,,,D,V,Y,G,V,F,Q,F,K,,,,,DVYGVFQFK,QFKLPDVYGVFQFKV, +,,sp|P63173|RL38_HUMAN,,,,,,,,Y,L,Y,T,L,V,I,T,,,,YLYTLVIT,FKVRCSRYLYTLVIT, +,,sp|Q92544|TM9S4_HUMAN,,,,T,Q,L,P,Y,E,Y,Y,S,L,P,F,,,,TQLPYEYYSLPF,SSRTQLPYEYYSLPF, +,,sp|P26599|PTBP1_HUMAN,,,,G,Q,P,I,Y,I,Q,F,S,N,H,K,,,,GQPIYIQFSNHK,VLRGQPIYIQFSNHK, +,,sp|P07900|HS90A_HUMAN,D,D,I,T,N,E,E,Y,G,E,F,Y,K,,,,,,DDITNEEYGEFYK,DDITNEEYGEFYKSL, +,,sp|P52565|GDIR1_HUMAN,,,,,A,E,E,Y,E,F,L,T,P,V,E,,,,AEEYEFLTPVE,YGPRAEEYEFLTPVE, +,,sp|P55884|EIF3B_HUMAN,,,,,N,G,D,Y,L,C,V,K,,,,,,,NGDYLCVK,HWQKNGDYLCVKVDR, +,,sp|P63010|AP2B1_HUMAN,,,,Q,G,H,I,Y,M,E,M,N,F,T,N,,,,QGHIYMEMNFTN,THRQGHIYMEMNFTN, +,,sp|P11940|PABP1_HUMAN; sp|Q13310|PABP4_HUMAN,,,S,L,G,Y,A,Y,V,N,F,Q,Q,P,A,,,,SLGYAYVNFQQPA,RRSLGYAYVNFQQPA, +,,sp|P60891|PRPS1_HUMAN; sp|P11908|PRPS2_HUMAN,,,,,,,V,Y,A,I,L,T,H,G,I,,,,VYAILTHGI,SAGATRVYAILTHGI,SAGATKVYAILTHGI +,,sp|P11310|ACADM_HUMAN,,,,I,Y,Q,I,Y,E,G,T,S,Q,I,Q,,,,IYQIYEGTSQIQ,DAKIYQIYEGTSQIQ, +,,sp|P11940|PABP1_HUMAN; sp|Q13310|PABP4_HUMAN,,R,S,L,G,Y,A,Y,V,N,F,Q,Q,P,A,,,,RSLGYAYVNFQQPA,RRSLGYAYVNFQQPA, +,,sp|Q71U36|TBA1A_HUMAN; sp|P68363|TBA1B_HUMAN; sp|Q9BQE3|TBA1C_HUMAN; sp|P68366|TBA4A_HUMAN,I,H,F,P,L,A,T,Y,A,P,V,I,S,A,E,,,,IHFPLATYAPVISAE,IHFPLATYAPVISAE, +,,sp|Q71U36|TBA1A_HUMAN; sp|P68363|TBA1B_HUMAN; sp|Q9BQE3|TBA1C_HUMAN; sp|P68366|TBA4A_HUMAN,,E,D,A,A,N,N,Y,A,R,,,,,,,,,EDAANNYAR,KEDAANNYARGHYTI, +,,sp|Q9H8H2|DDX31_HUMAN,,,,S,D,G,P,Y,A,L,V,L,V,P,T,,,,SDGPYALVLVPT,IQRSDGPYALVLVPT, +,,sp|P62826|RAN_HUMAN,,,,N,L,Q,Y,Y,D,I,S,A,K,,,,,,NLQYYDISAK,RKKNLQYYDISAKSN, +,,sp|O60506|HNRPQ_HUMAN,,,,,L,K,D,Y,A,F,I,H,F,D,E,,,,LKDYAFIHFDE,RVKKLKDYAFIHFDE, +,,sp|P23921|RIR1_HUMAN,,,I,I,D,I,N,Y,Y,P,V,P,E,A,C,,,,IIDINYYPVPEAC,NKIIDINYYPVPEAC, +,,sp|P62241|RS8_HUMAN,,,,,,Q,W,Y,E,S,H,Y,A,L,P,,,,QWYESHYALP,STPYRQWYESHYALP, +,,sp|P10253|LYAG_HUMAN,,,,,,G,A,Y,T,Q,V,I,F,L,A,,,,GAYTQVIFLA,EVLERGAYTQVIFLA, +,,sp|P27824|CALX_HUMAN,,,,,T,G,I,Y,E,E,K,,,,,,,,TGIYEEK,KNPKTGIYEEKHAKR, +,,sp|O60506|HNRPQ_HUMAN,,,,,,,D,Y,A,F,I,H,F,D,E,,,,DYAFIHFDE,RVKKLKDYAFIHFDE, +,,sp|Q9UHA4|LTOR3_HUMAN,I,I,C,Y,Y,N,T,Y,Q,V,V,Q,F,N,R,,,,IICYYNTYQVVQFNR,IICYYNTYQVVQFNR, +,,sp|P42229|STA5A_HUMAN,,L,Q,Q,T,Q,E,Y,F,I,I,Q,Y,Q,E,,,,LQQTQEYFIIQYQE,KLQQTQEYFIIQYQE, +,,sp|P23528|COF1_HUMAN,,,,,,M,I,Y,A,S,S,K,,,,,,,MIYASSK,PLKSKMIYASSKDAI, +,,sp|P06744|G6PI_HUMAN,T,N,G,Q,H,A,F,Y,Q,L,I,H,Q,G,T,,,,TNGQHAFYQLIHQGT,TNGQHAFYQLIHQGT, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN; sp|Q6S8J3|POTEE_HUMAN; sp|P0CG38|POTEI_HUMAN; sp|A5A3E0|POTEF_HUMAN; sp|P0CG39|POTEJ_HUMAN,,,,,,Q,E,Y,D,E,S,G,P,S,I,,,,QEYDESGPSI,MWISKQEYDESGPSI, +,,sp|P25705|ATPA_HUMAN,,,H,A,L,I,I,Y,D,D,L,S,K,,,,,,HALIIYDDLSK,GKHALIIYDDLSKQA, +,,sp|Q8WUM0|NU133_HUMAN,S,L,E,K,E,P,E,Y,V,P,W,T,A,T,S,,,,SLEKEPEYVPWTATS,SLEKEPEYVPWTATS, +,,sp|Q14204|DYHC1_HUMAN,P,N,Y,I,V,P,D,Y,M,P,V,V,Y,D,K,,,,PNYIVPDYMPVVYDK,PNYIVPDYMPVVYDK, +,,sp|Q9NR30|DDX21_HUMAN,,,,,,E,E,Y,Q,L,V,Q,V,E,Q,,,,EEYQLVQVEQ,FYQHKEEYQLVQVEQ, +,,sp|P34932|HSP74_HUMAN,N,A,V,E,E,Y,V,Y,E,M,R,,,,,,,,NAVEEYVYEMR,NAVEEYVYEMRDKLS, +,,sp|P53396|ACLY_HUMAN,,,,,E,G,D,Y,V,L,F,H,H,E,G,,,,EGDYVLFHHEG,YATREGDYVLFHHEG, +,,sp|Q01780|EXOSX_HUMAN,,,,D,D,T,H,Y,L,L,Y,I,Y,D,K,,,,DDTHYLLYIYDK,YARDDTHYLLYIYDK, +,,sp|P08238|HS90B_HUMAN,,,,,,S,I,Y,Y,I,T,G,E,S,K,,,,SIYYITGESK,KETQKSIYYITGESK, +,,sp|Q08211|DHX9_HUMAN,,,,D,F,V,N,Y,L,V,R,,,,,,,,DFVNYLVR,AARDFVNYLVRINEI, +,,sp|P07900|HS90A_HUMAN,,,,,,,F,Y,E,Q,F,S,K,,,,,,FYEQFSK,KENYKKFYEQFSKNI, +,,sp|P18124|RL7_HUMAN,,,,I,V,E,P,Y,I,A,W,G,Y,P,N,,,,IVEPYIAWGYPN,MLRIVEPYIAWGYPN, +,,sp|O43390|HNRPR_HUMAN,T,A,Y,E,D,Y,Y,Y,H,P,P,P,R,,,,,,TAYEDYYYHPPPR,TAYEDYYYHPPPRMP, +,,sp|Q16778|H2B2E_HUMAN; sp|P23527|H2B1O_HUMAN; sp|P06899|H2B1J_HUMAN; sp|P33778|H2B1B_HUMAN; sp|Q8N257|H2B3B_HUMAN; sp|Q6DRA6|H2B2D_HUMAN; sp|Q6DN03|H2B2C_HUMAN,,,E,S,Y,S,I,Y,V,Y,K,,,,,,,,ESYSIYVYK,RKESYSIYVYKVLKQ,RKESYSIYVYKVLKR +,,sp|Q9BWF3|RBM4_HUMAN; sp|Q9BQ04|RBM4B_HUMAN,,,,,,,N,Y,G,F,V,H,I,E,D,,,,NYGFVHIED,ECDIIKNYGFVHIED, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,T,V,P,I,Y,E,G,Y,A,L,P,H,,,,,,,TVPIYEGYALPH,TVPIYEGYALPHAIL, +,,sp|Q14839|CHD4_HUMAN,,,,,,,A,Y,H,M,V,C,L,D,P,,,,AYHMVCLDP,CDTCPRAYHMVCLDP, +,,sp|P24752|THIL_HUMAN,,,N,E,Q,D,A,Y,A,I,N,S,Y,T,R,,,,NEQDAYAINSYTR,ARNEQDAYAINSYTR, +,,sp|P62750|RL23A_HUMAN,,,,L,A,P,D,Y,D,A,L,D,V,A,N,,,,LAPDYDALDVAN,YVRLAPDYDALDVAN, +,,sp|Q969V3|NCLN_HUMAN,,,,T,H,A,A,Y,N,L,L,F,F,A,S,,,,THAAYNLLFFAS,YKRTHAAYNLLFFAS, +,,sp|Q5JPE7|NOMO2_HUMAN; sp|Q15155|NOMO1_HUMAN; sp|P69849|NOMO3_HUMAN,,S,D,V,E,I,N,Y,S,L,I,E,I,K,,,,,SDVEINYSLIEIK,KSDVEINYSLIEIKL, +,,sp|P06733|ENOA_HUMAN,S,G,A,S,T,G,I,Y,E,A,L,E,L,R,,,,,SGASTGIYEALELR,SGASTGIYEALELRD, +,,sp|P63173|RL38_HUMAN,,,,,,Y,L,Y,T,L,V,I,T,D,K,,,,YLYTLVITDK,VRCSRYLYTLVITDK, +,,sp|P62829|RL23_HUMAN,,,,,,N,L,Y,I,I,S,V,K,,,,,,NLYIISVK,NTGAKNLYIISVKGI, +,,sp|P78406|RAE1L_HUMAN,,,,,A,P,N,Y,S,C,V,M,T,G,S,,,,APNYSCVMTGS,HWIKAPNYSCVMTGS, +,,sp|P78527|PRKDC_HUMAN,,,H,D,V,G,A,Y,M,L,M,Y,K,,,,,,HDVGAYMLMYK,GKHDVGAYMLMYKGA, +,,sp|P06733|ENOA_HUMAN,,,I,G,A,E,V,Y,H,N,L,K,,,,,,,IGAEVYHNLK,MRIGAEVYHNLKNVI, +,,sp|Q14699|RFTN1_HUMAN,,,,,,Q,Y,Y,P,V,T,I,P,L,H,,,,QYYPVTIPLH,HQKCRQYYPVTIPLH, +,,sp|P11021|BIP_HUMAN,,,,,T,K,P,Y,I,Q,V,D,I,G,G,,,,TKPYIQVDIGG,VEKKTKPYIQVDIGG, +,,sp|P62258|1433E_HUMAN,D,D,R,E,D,L,V,Y,Q,A,K,,,,,,,,DDREDLVYQAK,DDREDLVYQAKLAEQ, +,,sp|Q15084|PDIA6_HUMAN,,,,,,N,S,Y,L,E,V,L,L,K,,,,,NSYLEVLLK,GAAGRNSYLEVLLKL, +,,sp|O15144|ARPC2_HUMAN,,,,,,,D,Y,L,H,Y,H,I,K,,,,,DYLHYHIK,LIHTFRDYLHYHIKC, +,,sp|Q9UKV8|AGO2_HUMAN,,,,,,N,L,Y,T,A,M,P,L,P,I,,,,NLYTAMPLPI,FDGRKNLYTAMPLPI, +,,sp|Q9Y2X3|NOP58_HUMAN,,,,,T,Q,L,Y,E,Y,L,Q,N,R,,,,,TQLYEYLQNR,SEYRTQLYEYLQNRM, +,,sp|Q14152|EIF3A_HUMAN,L,Q,Q,V,S,Q,I,Y,Q,S,I,E,F,S,R,,,,LQQVSQIYQSIEFSR,LQQVSQIYQSIEFSR, +,,sp|P00338|LDHA_HUMAN,,,,D,Q,L,I,Y,N,L,L,K,,,,,,,DQLIYNLLK,TLKDQLIYNLLKEEQ, +,,sp|Q71U36|TBA1A_HUMAN; sp|P68363|TBA1B_HUMAN; sp|Q9BQE3|TBA1C_HUMAN; sp|P68366|TBA4A_HUMAN,,,,V,G,I,N,Y,Q,P,P,T,V,V,P,,,,VGINYQPPTVVP,GFKVGINYQPPTVVP, +,,sp|Q9UIB8|SLAF5_HUMAN,E,E,P,V,N,T,V,Y,S,E,V,Q,F,A,D,,,,EEPVNTVYSEVQFAD,EEPVNTVYSEVQFAD, +,,sp|Q14697|GANAB_HUMAN,H,H,G,P,Q,T,L,Y,L,P,V,T,L,S,S,,,,HHGPQTLYLPVTLSS,HHGPQTLYLPVTLSS, +,,sp|P31483|TIA1_HUMAN,,,,,,,G,Y,G,F,V,S,F,F,N,,,,GYGFVSFFN,ATGKSKGYGFVSFFN, +,,sp|Q9UMX5|NENF_HUMAN,E,E,E,D,Q,P,I,Y,L,A,V,K,,,,,,,EEEDQPIYLAVK,EEEDQPIYLAVKGVV, +,,sp|O75503|CLN5_HUMAN,,,,,,I,T,Y,E,E,I,P,L,P,I,,,,ITYEEIPLPI,FPFIKITYEEIPLPI, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN; sp|Q6S8J3|POTEE_HUMAN; sp|A5A3E0|POTEF_HUMAN,,,,,,,S,Y,E,L,P,D,G,Q,V,,,,SYELPDGQV,SSSLEKSYELPDGQV, +,,sp|P19338|NUCL_HUMAN,,,,,G,I,A,Y,I,E,F,K,,,,,,,GIAYIEFK,GKSKGIAYIEFKTEA, +,,sp|P61604|CH10_HUMAN,V,V,L,D,D,K,D,Y,F,L,F,R,,,,,,,VVLDDKDYFLFR,VVLDDKDYFLFRDGD, +,,sp|Q15459|SF3A1_HUMAN,,,,,,L,Q,Y,E,G,I,F,I,K,,,,,LQYEGIFIK,AGKQKLQYEGIFIKD, +,,sp|P23921|RIR1_HUMAN,,I,I,D,I,N,Y,Y,P,V,P,E,A,C,L,,,,IIDINYYPVPEACL,KIIDINYYPVPEACL, +,,sp|P47756|CAPZB_HUMAN,,,,,,,D,Y,L,L,C,D,Y,N,R,,,,DYLLCDYNR,DKVVGKDYLLCDYNR, +,,sp|Q9GZY6|NTAL_HUMAN,E,D,D,D,A,N,S,Y,E,N,V,L,I,C,K,,,,EDDDANSYENVLICK,EDDDANSYENVLICK, +,,sp|P23528|COF1_HUMAN,H,E,L,Q,A,N,C,Y,E,E,V,K,D,R,,,,,HELQANCYEEVKDR,HELQANCYEEVKDRC, +,,sp|Q13347|EIF3I_HUMAN,S,A,A,L,S,P,N,Y,D,H,V,V,L,G,G,,,,SAALSPNYDHVVLGG,SAALSPNYDHVVLGG, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,D,L,T,D,Y,L,M,K,,,,,,,,DLTDYLMK,AGRDLTDYLMKILTE, +,,sp|P62273|RS29_HUMAN,,,G,H,Q,Q,L,Y,W,S,H,P,R,,,,,,GHQQLYWSHPR,MGHQQLYWSHPRKF, +,,sp|P00338|LDHA_HUMAN,,Q,V,V,E,S,A,Y,E,V,I,K,,,,,,,QVVESAYEVIK,KQVVESAYEVIKLKG, +,,sp|P53396|ACLY_HUMAN,,,T,T,D,G,V,Y,E,G,V,A,I,G,G,,,,TTDGVYEGVAIGG,SRTTDGVYEGVAIGG, +,,sp|P63010|AP2B1_HUMAN,,,,,D,S,D,Y,Y,N,M,L,L,K,,,,,DSDYYNMLLK,LLPKDSDYYNMLLKK, +,,sp|P09211|GSTP1_HUMAN; sp|GSTP1_HUMAN,A,F,L,A,S,P,E,Y,V,N,L,P,I,N,G,,,,AFLASPEYVNLPING,AFLASPEYVNLPING, +,,sp|Q7KZF4|SND1_HUMAN,,,,,,,E,Y,G,M,I,Y,L,G,K,,,,EYGMIYLGK,KTPQGREYGMIYLGK, +,,sp|Q96I25|SPF45_HUMAN,A,A,I,P,P,P,V,Y,E,E,Q,D,R,P,R,,,,AAIPPPVYEEQDRPR,AAIPPPVYEEQDRPR, +,,sp|Q9NQ50|RM40_HUMAN,,,,,,,V,Y,T,Q,V,E,F,K,,,,,VYTQVEFK,YNDITKVYTQVEFKR, +,,sp|P62269|RS18_HUMAN,,,,,,,,Y,A,H,V,V,L,R,,,,,YAHVVLR,IKGVGRRYAHVVLRK, +,,sp|P61158|ARP3_HUMAN,,A,E,P,E,D,H,Y,F,L,L,T,E,P,P,,,,AEPEDHYFLLTEPP,RAEPEDHYFLLTEPP, +,,sp|P62249|RS16_HUMAN,G,G,H,V,A,Q,I,Y,A,I,R,,,,,,,,GGHVAQIYAIR,GGHVAQIYAIRQSIS, +,,sp|Q99880|H2B1L_HUMAN; sp|Q99877|H2B1N_HUMAN; sp|Q93079|H2B1H_HUMAN; sp|P62807|H2B1C_HUMAN; sp|P58876|H2B1D_HUMAN; sp|O60814|H2B1K_HUMAN; sp|Q99879|H2B1M_HUMAN; sp|Q5QNW6|H2B2F_HUMAN; sp|P57053|H2BFS_HUMAN,,,,,K,E,S,Y,S,V,Y,V,Y,K,,,,,KESYSVYVYK,KRSRKESYSVYVYKV, +,,sp|P09211|GSTP1_HUMAN; sp|GSTP1_HUMAN,,P,P,Y,T,V,V,Y,F,P,V,R,,,,,,,PPYTVVYFPVR,MPPYTVVYFPVRGRC,PPYTVVYFPVRGRC +,,sp|Q2M2I8|AAK1_HUMAN,,,,,,G,H,Y,V,L,C,D,F,G,S,,,,GHYVLCDFGS,LLHDRGHYVLCDFGS, +,,sp|Q13595|TRA2A_HUMAN; sp|P62995|TRA2B_HUMAN,R,R,S,P,S,P,Y,Y,S,R,,,,,,,,,RRSPSPYYSR,RRSPSPYYSRYRSRS,RRSPSPYYSRGGYRS +,,sp|P68104|EF1A1_HUMAN; sp|Q5VTE0|EF1A3_HUMAN,T,T,T,G,H,L,I,Y,K,,,,,,,,,,TTTGHLIYK,TTTGHLIYKCGGIDK, +,,sp|Q14240|IF4A2_HUMAN,,G,F,K,D,Q,I,Y,E,I,F,Q,K,,,,,,GFKDQIYEIFQK,RGFKDQIYEIFQKLN, +,,sp|Q13263|TIF1B_HUMAN,,,D,I,V,E,N,Y,F,M,R,,,,,,,,DIVENYFMR,SKDIVENYFMRDSGS, +,,sp|O43390|HNRPR_HUMAN,S,T,A,Y,E,D,Y,Y,Y,H,P,P,P,R,,,,,STAYEDYYYHPPPR,STAYEDYYYHPPPRM, +,,sp|P62805|H4_HUMAN,,R,I,S,G,L,I,Y,E,E,T,R,,,,,,,RISGLIYEETR,KRISGLIYEETRGVL, +,,sp|P47813|IF1AX_HUMAN; sp|O14602|IF1AY_HUMAN,,,E,D,G,Q,E,Y,A,Q,V,I,K,,,,,,EDGQEYAQVIK,FKEDGQEYAQVIKML, +,,sp|Q96PE3|INP4A_HUMAN,D,G,G,S,D,Q,N,Y,D,I,V,T,I,G,A,,,,DGGSDQNYDIVTIGA,DGGSDQNYDIVTIGA, +,,sp|P24928|RPB1_HUMAN,,,,,,E,L,Y,H,V,I,S,F,D,G,,,,ELYHVISFDG,KALERELYHVISFDG, +,,sp|Q8TD19|NEK9_HUMAN,,,,,,E,L,Y,T,W,V,N,M,Q,G,,,,ELYTWVNMQG,VTVEKELYTWVNMQG, +,,sp|P14618|KPYM_HUMAN,,E,A,E,A,A,I,Y,H,L,Q,L,F,E,E,,,,EAEAAIYHLQLFEE,REAEAAIYHLQLFEE, +,,sp|P25789|PSA4_HUMAN,Q,S,D,P,S,G,N,Y,G,G,W,K,,,,,,,QSDPSGNYGGWK,QSDPSGNYGGWKATC, +,,sp|P09211|GSTP1_HUMAN; sp|GSTP1_HUMAN,,,,,,P,P,Y,T,V,V,Y,F,P,V,,,,PPYTVVYFPV,MPPYTVVYFPV,PPYTVVYFPV +,,sp|O43390|HNRPR_HUMAN,,,,,,,G,Y,A,F,I,T,F,C,G,,,,GYAFITFCG,LSGQNRGYAFITFCG, +,,sp|Q92835|SHIP1_HUMAN,,,,,N,Q,N,Y,M,N,I,L,R,,,,,,NQNYMNILR,KLRRNQNYMNILRFL, +,,sp|Q14166|TTL12_HUMAN,,,,,,,,Y,I,V,L,L,R,,,,,,YIVLLR,KVKFDIRYIVLLRSV, +,,sp|P60174|TPIS_HUMAN,,,,V,V,L,A,Y,E,P,V,W,A,I,G,,,,VVLAYEPVWAIG,WSKVVLAYEPVWAIG, +,,sp|Q9UKK9|NUDT5_HUMAN,,,,,T,L,H,Y,E,C,I,V,L,V,K,,,,TLHYECIVLVK,VLQRTLHYECIVLVK, +,,sp|Q9Y277|VDAC3_HUMAN,,,,,V,C,N,Y,G,L,T,F,T,Q,K,,,,VCNYGLTFTQK,TKYKVCNYGLTFTQK, +,,sp|Q16666|IF16_HUMAN,Q,A,S,G,N,I,V,Y,G,V,F,M,L,H,K,,,,QASGNIVYGVFMLHK,QASGNIVYGVFMLHK, +,,sp|Q96BQ5|CC127_HUMAN,,,,,Q,N,I,Y,C,S,L,F,L,P,R,,,,QNIYCSLFLPR,LTERQNIYCSLFLPR, +,,sp|P50395|GDIB_HUMAN,D,Y,L,D,Q,P,C,Y,E,T,I,N,R,,,,,,DYLDQPCYETINR,DYLDQPCYETINRIK, +,,sp|P62805|H4_HUMAN,,,,D,A,V,T,Y,T,E,H,A,K,,,,,,DAVTYTEHAK,VIRDAVTYTEHAKRK, +,,sp|O75369|FLNB_HUMAN,H,D,N,K,D,G,T,Y,A,V,T,Y,I,P,D,,,,HDNKDGTYAVTYIPD,HDNKDGTYAVTYIPD, +,,sp|P13639|EF2_HUMAN,,,,,R,C,L,Y,A,S,V,L,T,A,Q,,,,RCLYASVLTAQ,PTARRCLYASVLTAQ, +,,sp|P60842|IF4A1_HUMAN; sp|P38919|IF4A3_HUMAN; sp|Q14240|IF4A2_HUMAN,,,,,,G,I,Y,A,Y,G,F,E,K,P,,,,GIYAYGFEKP,ESLLRGIYAYGFEKP,EDLLRGIYAYGFEKP +,,sp|P0DP24|CALM2_HUMAN,F,D,K,D,G,N,G,Y,I,S,A,A,E,L,R,,,,FDKDGNGYISAAELR,FDKDGNGYISAAELR, +,,sp|E9PAV3|NACAM_HUMAN; sp|Q13765|NACA_HUMAN,,S,P,A,S,D,T,Y,I,V,F,G,E,A,K,,,,SPASDTYIVFGEAK,KSPASDTYIVFGEAK, +,,sp|P23193|TCEA1_HUMAN,,,,,N,C,T,Y,T,Q,V,Q,T,R,,,,,NCTYTQVQTR,CKKKNCTYTQVQTRS, +,,sp|Q06830|PRDX1_HUMAN,,,T,I,A,Q,D,Y,G,V,L,K,,,,,,,TIAQDYGVLK,KRTIAQDYGVLKADE, +,,sp|Q99497|PARK7_HUMAN,,,,,E,G,P,Y,D,V,V,V,L,P,G,,,,EGPYDVVVLPG,DAKKEGPYDVVVLPG, +,,sp|P84098|RL19_HUMAN,,,,,,H,M,Y,H,S,L,Y,L,K,,,,,HMYHSLYLK,KKIDRHMYHSLYLKV, +,,sp|Q92544|TM9S4_HUMAN,,T,Q,L,P,Y,E,Y,Y,S,L,P,F,C,Q,,,,TQLPYEYYSLPFCQ,RTQLPYEYYSLPFCQ, +,,sp|P11940|PABP1_HUMAN; sp|Q13310|PABP4_HUMAN,,,,,S,L,G,Y,A,Y,V,N,F,Q,Q,,,,SLGYAYVNFQQ,ITRRSLGYAYVNFQQ, +,,sp|Q07020|RL18_HUMAN,,,,S,Q,D,I,Y,L,R,,,,,,,,,SQDIYLR,EPKSQDIYLRLLVKL, +,,sp|P46783|RS10_HUMAN,,,,,I,A,I,Y,E,L,L,F,K,,,,,,IAIYELLFK,KKNRIAIYELLFKEG, +,,sp|Q9NWQ8|PHAG1_HUMAN,,,,,E,N,D,Y,E,S,I,S,D,L,Q,,,,ENDYESISDLQ,LVPKENDYESISDLQ, +,,sp|P26641|EF1G_HUMAN,,,A,A,G,T,L,Y,T,Y,P,E,N,W,R,,,,AAGTLYTYPENWR,MAAGTLYTYPENWR, +,,sp|P62906|RL10A_HUMAN,,,,,D,T,L,Y,E,A,V,R,,,,,,,DTLYEAVR,KVSRDTLYEAVREVL, +,,sp|Q9HC35|EMAL4_HUMAN,I,I,N,Q,E,G,E,Y,I,K,M,F,M,R,,,,,IINQEGEYIKMFMR,IINQEGEYIKMFMRG, +,,sp|P04040|CATA_HUMAN; sp|CATA_HUMAN,,,,L,G,P,N,Y,L,H,I,P,V,N,C,,,,LGPNYLHIPVNC,RHRLGPNYLHIPVNC, +,,sp|P08238|HS90B_HUMAN,E,M,T,S,L,S,E,Y,V,S,R,,,,,,,,EMTSLSEYVSR,EMTSLSEYVSRMKET, +,,sp|P42224|STAT1_HUMAN,,,,,S,Q,W,Y,E,L,Q,Q,L,D,S,,,,SQWYELQQLDS,MSQWYELQQLDS, +,,sp|P19338|NUCL_HUMAN,,,,S,I,S,L,Y,Y,T,G,E,K,,,,,,SISLYYTGEK,DGRSISLYYTGEKGQ, +,,sp|P78527|PRKDC_HUMAN,,,,,,,F,Y,Q,G,F,L,F,S,E,,,,FYQGFLFSE,VFNELKFYQGFLFSE, +,,sp|Q08211|DHX9_HUMAN,A,H,N,N,M,T,N,Y,A,T,V,W,A,S,K,,,,AHNNMTNYATVWASK,AHNNMTNYATVWASK, +,,sp|O60841|IF2P_HUMAN,,,T,S,E,V,P,Y,A,G,I,N,I,G,P,,,,TSEVPYAGINIGP,LKTSEVPYAGINIGP, +,,sp|P63244|RACK1_HUMAN,,,,D,E,T,N,Y,G,I,P,Q,R,,,,,,DETNYGIPQR,LTRDETNYGIPQRAL, +,,sp|Q99880|H2B1L_HUMAN; sp|Q99877|H2B1N_HUMAN; sp|Q93079|H2B1H_HUMAN; sp|P62807|H2B1C_HUMAN; sp|P58876|H2B1D_HUMAN; sp|O60814|H2B1K_HUMAN; sp|Q99879|H2B1M_HUMAN; sp|Q5QNW6|H2B2F_HUMAN; sp|P57053|H2BFS_HUMAN,,,,,,E,S,Y,S,V,Y,V,Y,K,,,,,ESYSVYVYK,KRSRKESYSVYVYKV, +,,sp|P62263|RS14_HUMAN,D,R,D,E,S,S,P,Y,A,A,M,L,A,A,Q,,,,DRDESSPYAAMLAAQ,DRDESSPYAAMLAAQ, +,,sp|P42704|LPPRC_HUMAN,,,,,,A,L,Y,E,H,L,T,A,K,,,,,ALYEHLTAK,VTSAKALYEHLTAKN,
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/C and D finder/test-data/input2.csv Tue May 22 18:17:33 2018 -0400 @@ -0,0 +1,36 @@ +Amino Acids,sp|Q14204|DYHC1_HUMAN,sp|A5A3E0|POTEF_HUMAN,sp|P62269|RS18_HUMAN,sp|E9PAV3|NACAM_HUMAN,sp|P07195|LDHB_HUMAN,sp|Q9NR30|DDX21_HUMAN,sp|P26599|PTBP1_HUMAN,sp|Q14839|CHD4_HUMAN,sp|P78406|RAE1L_HUMAN,sp|Q9BQE3|TBA1C_HUMAN,sp|Q9NWQ8|PHAG1_HUMAN,sp|Q8WUM0|NU133_HUMAN,sp|P08238|HS90B_HUMAN,sp|P31939|PUR9_HUMAN,sp|P60174|TPIS_HUMAN,sp|P23193|TCEA1_HUMAN,sp|Q8TDN6|BRX1_HUMAN,sp|P62750|RL23A_HUMAN,sp|P11940|PABP1_HUMAN,sp|Q9UM73|ALK_HUMAN,sp|P62807|H2B1C_HUMAN,sp|P36897|TGFR1_HUMAN,sp|Q6S8J3|POTEE_HUMAN,sp|P10253|LYAG_HUMAN,sp|P52272|HNRPM_HUMAN,sp|Q9BTM1|H2AJ_HUMAN,sp|Q08211|DHX9_HUMAN,sp|P22234|PUR6_HUMAN,sp|P57053|H2BFS_HUMAN,sp|P10809|CH60_HUMAN,sp|P55884|EIF3B_HUMAN,sp|Q9H8H2|DDX31_HUMAN,sp|Q07020|RL18_HUMAN,sp|P42229|STA5A_HUMAN,sp|Q9NQ50|RM40_HUMAN,sp|P07948|LYN_HUMAN,sp|P60891|PRPS1_HUMAN,sp|Q9Y3I0|RTCB_HUMAN,sp|P60842|IF4A1_HUMAN,sp|P62917|RL8_HUMAN,sp|P63010|AP2B1_HUMAN,sp|Q9GZY6|NTAL_HUMAN,sp|P62979|RS27A_HUMAN,sp|P22626|ROA2_HUMAN,sp|P00558|PGK1_HUMAN,sp|Q5VTE0|EF1A3_HUMAN,sp|Q71U36|TBA1A_HUMAN,sp|P63244|RACK1_HUMAN,sp|P04040|CATA_HUMAN,sp|Q99497|PARK7_HUMAN,sp|P25789|PSA4_HUMAN,sp|Q16778|H2B2E_HUMAN,sp|P48444|COPD_HUMAN,sp|Q02790|FKBP4_HUMAN,sp|P78527|PRKDC_HUMAN,sp|P11310|ACADM_HUMAN,sp|P54136|SYRC_HUMAN,sp|CATA_HUMAN,sp|Q14697|GANAB_HUMAN,sp|GSTP1_HUMAN,sp|O60814|H2B1K_HUMAN,sp|Q9BXJ9|NAA15_HUMAN,sp|P62906|RL10A_HUMAN,sp|Q6FI13|H2A2A_HUMAN,sp|P18124|RL7_HUMAN,sp|P19105|ML12A_HUMAN,sp|O60841|IF2P_HUMAN,sp|Q99878|H2A1J_HUMAN,sp|Q96BQ5|CC127_HUMAN,sp|P23528|COF1_HUMAN,sp|Q07666|KHDR1_HUMAN,sp|P60709|ACTB_HUMAN,sp|P30086|PEBP1_HUMAN,sp|Q13263|TIF1B_HUMAN,sp|Q9UGN4|CLM8_HUMAN,sp|P54727|RD23B_HUMAN,sp|P38919|IF4A3_HUMAN,sp|Q13310|PABP4_HUMAN,sp|P55060|XPO2_HUMAN,sp|Q14699|RFTN1_HUMAN,sp|Q8IUE6|H2A2B_HUMAN,sp|P78347|GTF2I_HUMAN,sp|P39656|OST48_HUMAN,sp|P62987|RL40_HUMAN,sp|Q16881|TRXR1_HUMAN,sp|Q6DN03|H2B2C_HUMAN,sp|Q08J23|NSUN2_HUMAN,sp|Q9BWF3|RBM4_HUMAN,sp|Q9UIB8|SLAF5_HUMAN,sp|Q01780|EXOSX_HUMAN,sp|P19338|NUCL_HUMAN,sp|O75503|CLN5_HUMAN,sp|P14618|KPYM_HUMAN,sp|Q13595|TRA2A_HUMAN,sp|P68363|TBA1B_HUMAN,sp|Q14240|IF4A2_HUMAN,sp|P36896|ACV1B_HUMAN,sp|Q9HC35|EMAL4_HUMAN,sp|Q02880|TOP2B_HUMAN,sp|P50395|GDIB_HUMAN,sp|O75369|FLNB_HUMAN,sp|P47756|CAPZB_HUMAN,sp|O43390|HNRPR_HUMAN,sp|Q5R372|RBG1L_HUMAN,sp|P07900|HS90A_HUMAN,sp|P14625|ENPL_HUMAN,sp|P06733|ENOA_HUMAN,sp|P68104|EF1A1_HUMAN,sp|Q99880|H2B1L_HUMAN,sp|Q2M2I8|AAK1_HUMAN,sp|P26641|EF1G_HUMAN,sp|Q15084|PDIA6_HUMAN,sp|Q96PE3|INP4A_HUMAN,sp|Q14166|TTL12_HUMAN,sp|Q92835|SHIP1_HUMAN,sp|Q16531|DDB1_HUMAN,sp|Q5JPE7|NOMO2_HUMAN,sp|P61604|CH10_HUMAN,sp|P0CG39|POTEJ_HUMAN,sp|Q9BQ04|RBM4B_HUMAN,sp|P62995|TRA2B_HUMAN,sp|P52788|SPSY_HUMAN,sp|P58876|H2B1D_HUMAN,sp|Q9BUQ8|DDX23_HUMAN,sp|P23921|RIR1_HUMAN,sp|O76094|SRP72_HUMAN,sp|Q14152|EIF3A_HUMAN,sp|Q13765|NACA_HUMAN,sp|Q13347|EIF3I_HUMAN,sp|O14602|IF1AY_HUMAN,sp|P42224|STAT1_HUMAN,sp|Q9Y2X3|NOP58_HUMAN,sp|P62195|PRS8_HUMAN,sp|P53396|ACLY_HUMAN,sp|O75368|SH3L1_HUMAN,sp|Q93079|H2B1H_HUMAN,sp|P62258|1433E_HUMAN,sp|Q8NER5|ACV1C_HUMAN,sp|Q9UHA4|LTOR3_HUMAN,sp|Q96KK5|H2A1H_HUMAN,sp|P11908|PRPS2_HUMAN,sp|P62829|RL23_HUMAN,sp|P12956|XRCC6_HUMAN,sp|P11021|BIP_HUMAN,sp|P63173|RL38_HUMAN,sp|P06899|H2B1J_HUMAN,sp|O60506|HNRPQ_HUMAN,sp|Q5QNW6|H2B2F_HUMAN,sp|Q9UKV8|AGO2_HUMAN,sp|P63261|ACTG_HUMAN,sp|P0CG38|POTEI_HUMAN,sp|P15144|AMPN_HUMAN,sp|P68366|TBA4A_HUMAN,sp|P62263|RS14_HUMAN,sp|P13639|EF2_HUMAN,sp|P0CG47|UBB_HUMAN,sp|Q15155|NOMO1_HUMAN,sp|Q9UKK9|NUDT5_HUMAN,sp|P23527|H2B1O_HUMAN,sp|Q15459|SF3A1_HUMAN,sp|P13796|PLSL_HUMAN,sp|Q6DRA6|H2B2D_HUMAN,sp|Q8TD19|NEK9_HUMAN,sp|P62805|H4_HUMAN,sp|Q9UMX5|NENF_HUMAN,sp|P24928|RPB1_HUMAN,sp|Q8N257|H2B3B_HUMAN,sp|P11586|C1TC_HUMAN,sp|O15144|ARPC2_HUMAN,sp|O14950|ML12B_HUMAN,sp|P61254|RL26_HUMAN,sp|P52565|GDIR1_HUMAN,sp|P00338|LDHA_HUMAN,sp|P25705|ATPA_HUMAN,sp|P09211|GSTP1_HUMAN,sp|P0DP24|CALM2_HUMAN,sp|Q06830|PRDX1_HUMAN,sp|P62249|RS16_HUMAN,sp|Q16666|IF16_HUMAN,sp|P33778|H2B1B_HUMAN,sp|Q7KZF4|SND1_HUMAN,sp|P0C0S8|H2A1_HUMAN,sp|Q969V3|NCLN_HUMAN,sp|P08865|RSSA_HUMAN,sp|P61158|ARP3_HUMAN,sp|P26196|DDX6_HUMAN,sp|P31483|TIA1_HUMAN,sp|Q99877|H2B1N_HUMAN,sp|P62241|RS8_HUMAN,sp|P27824|CALX_HUMAN,sp|Q02543|RL18A_HUMAN,sp|P62899|RL31_HUMAN,sp|Q96PK6|RBM14_HUMAN,sp|P62273|RS29_HUMAN,sp|P0CG48|UBC_HUMAN,sp|P42704|LPPRC_HUMAN,sp|P84098|RL19_HUMAN,sp|Q01469|FABP5_HUMAN,sp|P47813|IF1AX_HUMAN,sp|P84090|ERH_HUMAN,sp|Q16777|H2A2C_HUMAN,sp|P49321|NASP_HUMAN,sp|Q99879|H2B1M_HUMAN,sp|P24752|THIL_HUMAN,sp|Q08945|SSRP1_HUMAN,sp|P34932|HSP74_HUMAN,sp|P69849|NOMO3_HUMAN,sp|Q96I25|SPF45_HUMAN,sp|Q9Y277|VDAC3_HUMAN,sp|P62826|RAN_HUMAN,sp|Q92544|TM9S4_HUMAN,sp|P46783|RS10_HUMAN,sp|P06744|G6PI_HUMAN,sp|O14979|HNRDL_HUMAN 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+Negative,13.75376668,15.25581395,10.52631579,5.293551492,11.9760479,13.92081737,7.90960452,17.46861925,9.510869565,14.0311804,17.36111111,13.4083045,20.3038674,11.82432432,12.58741259,15.61461794,11.898017,8.974358974,10.22012579,9.938271605,7.936507937,10.93439364,15.25581395,9.453781513,12.05479452,6.976744186,11.57480315,12,7.936507937,13.96160558,17.1990172,8.813160987,6.382978723,11.96473552,15.53398058,14.2578125,11.94968553,11.88118812,14.28571429,6.614785992,12.48665955,15.22633745,12.17948718,11.04815864,11.99040767,11.47186147,14.19068736,9.463722397,11.57495256,12.6984127,14.17624521,7.936507937,14.28571429,16.99346405,12.23352713,11.87648456,14.39393939,11.59695817,12.3940678,11.00478469,7.936507937,15.70438799,9.677419355,6.923076923,8.467741935,20.46783626,22.21311475,7.03125,14.61538462,16.26506024,12.18961625,13.06666667,12.8342246,12.5748503,11.37123746,11.00244499,13.86861314,10.71428571,11.84346035,14.01384083,6.923076923,14.62925852,10.74561404,10.15625,11.86440678,4.663212435,13.82007823,12.08791209,9.855072464,12.88135593,24.78873239,10.61452514,12.42937853,9.929078014,14.19068736,14.4963145,11.28712871,13.14984709,15.00615006,13.93258427,12.29823213,14.80144404,14.21800948,14.84662577,20.6284153,21.29514321,12.67281106,11.47186147,7.936507937,9.157127992,13.04347826,15,12.07778915,14.44099379,12.36333053,12.80701754,11.36543015,12.74509804,15.31791908,12.53481894,10.41666667,15.57377049,7.936507937,18.53658537,12.12121212,11.32637854,23.15484805,18.13953488,13.23076923,22.22222222,13.73333333,15.50094518,14.77832512,11.0808356,14.03508772,7.936507937,20,10.14198783,10.48387097,7.03125,11.94968553,6.428571429,15.7635468,16.97247706,12.85714286,7.936507937,13.64365971,7.936507937,9.313154831,13.06666667,15.06976744,11.27197518,14.28571429,10.59602649,13.28671329,14.41048035,11.37479542,16.43835616,7.936507937,15.13240858,14.19457735,4.87804878,12.46169561,6.796116505,15.11627907,10.45685279,7.936507937,11.44385027,14.33333333,19.76744186,10.34482759,18.1372549,10.84337349,10.84990958,10.95238095,25.5033557,11.55778894,8.219178082,11.84713376,7.936507937,13.84615385,6.923076923,10.8348135,13.55932203,13.63636364,10.76604555,8.031088083,7.936507937,9.615384615,23.14189189,5.681818182,10.4,5.231689088,3.571428571,14.45255474,13.62984218,9.693877551,14.81481481,22.22222222,14.42307692,6.976744186,24.74619289,7.936507937,9.133489461,17.348378,16.30952381,11.45662848,18.20448878,8.833922261,12.5,9.501557632,10.90909091,10.5734767,10.23809524 +Postive,14.50710288,16.09302326,26.97368421,8.614051973,12.2754491,19.15708812,12.42937853,17.31171548,13.31521739,11.80400891,11.11111111,11.24567474,16.57458564,13.17567568,12.58741259,17.60797342,23.22946176,28.84615385,14.77987421,11.97530864,24.6031746,14.31411531,16.09302326,9.978991597,14.24657534,21.70542636,12.99212598,13.17647059,24.6031746,13.61256545,13.75921376,18.33137485,28.19148936,12.97229219,21.3592233,15.4296875,14.1509434,14.65346535,13.30049261,24.90272374,11.41942369,10.69958848,25,14.44759207,13.9088729,16.23376623,11.75166297,12.30283912,15.37001898,13.75661376,16.09195402,24.6031746,14.67710372,15.68627451,14.0746124,14.25178147,15.45454545,15.39923954,13.13559322,10.52631579,24.6031746,17.89838337,22.11981567,23.07692308,26.20967742,14.61988304,20.6557377,22.65625,18.07692308,18.07228916,15.1241535,12.26666667,16.04278075,12.45508982,10.70234114,8.068459658,14.59854015,14.9068323,11.74047374,13.66782007,21.53846154,14.92985972,11.84210526,23.4375,13.86748844,22.79792746,15.51499348,14.56043956,11.30434783,16.15819209,16.47887324,12.5698324,15.06591337,27.30496454,11.75166297,13.51351351,13.86138614,14.57696228,16.97416974,14.38202247,12.06764028,14.07942238,16.11374408,13.37423313,16.66666667,15.69115816,14.05529954,16.01731602,24.6031746,9.989594173,13.95881007,12.5,14.12487206,13.81987578,15.05466779,11.40350877,11.20757695,14.70588235,15.60693642,14.48467967,27.77777778,12.56830601,24.6031746,24.63414634,13.76262626,16.98956781,24.16787265,10.69767442,12.92307692,19.44444444,14,20.41587902,16.74876847,13.16984559,12.28070175,24.6031746,13.7254902,12.98174442,12.09677419,22.65625,13.52201258,19.28571429,16.74876847,14.52599388,30,24.6031746,16.5329053,24.6031746,16.53084983,12.26666667,15.90697674,10.54808687,11.83035714,19.86754967,14.56876457,15.72052402,11.29296236,12.78538813,24.6031746,13.2408575,13.07814992,22.56097561,12.25740552,26.21359223,14.53488372,12.43654822,24.6031746,13.47593583,17.66666667,14.53488372,31.03448276,15.19607843,13.85542169,13.56238698,10.47619048,10.06711409,14.57286432,21.91780822,17.32484076,24.6031746,15.71428571,23.07692308,12.96625222,10.16949153,13.63636364,14.49275362,10.3626943,24.6031746,27.88461538,14.18918919,26.13636364,25.6,10.01494768,25,15.76642336,13.91678623,35.20408163,15.55555556,19.44444444,14.42307692,22.48062016,10.91370558,24.6031746,11.94379391,18.61777151,14.04761905,11.12929624,17.95511222,12.36749117,15.27777778,10.43613707,21.81818182,14.87455197,16.42857143 +Amide,9.599655618,9.395348837,7.894736842,4.234841193,8.383233533,8.556832695,12.42937853,7.740585774,10.32608696,7.126948775,8.796296296,8.823529412,6.767955801,7.432432432,7.342657343,9.302325581,8.21529745,5.769230769,10.6918239,7.901234568,4.761904762,5.964214712,9.302325581,7.983193277,6.164383562,9.302325581,9.291338583,8.235294118,4.761904762,6.457242583,8.108108108,7.520564042,5.319148936,13.97984887,7.766990291,7.03125,7.547169811,8.316831683,9.113300493,5.447470817,10.45891142,8.230452675,7.051282051,8.21529745,6.954436451,5.411255411,7.095343681,8.201892744,11.19544592,5.291005291,8.812260536,4.761904762,8.023483366,8.061002179,8.260658915,8.551068884,8.636363636,11.21673004,7.097457627,10.04784689,4.761904762,8.891454965,9.216589862,8.461538462,8.064516129,9.356725146,7.213114754,8.59375,11.53846154,3.012048193,5.643340858,5.6,5.882352941,6.946107784,6.35451505,12.46943765,7.785888078,10.0931677,10.5046344,9.688581315,9.230769231,7.51503006,6.798245614,10.9375,6.779661017,4.663212435,8.213820078,7.692307692,10.43478261,10.50847458,4.929577465,7.262569832,6.026365348,3.191489362,7.095343681,9.090909091,6.732673267,7.951070336,8.241082411,6.741573034,6.149116065,10.46931408,9.320695103,7.852760736,7.650273224,6.351183064,8.064516129,5.627705628,4.761904762,15.08844953,8.466819222,5.909090909,8.700102354,7.919254658,8.074011775,8.859649123,7.73480663,3.921568627,9.633911368,7.799442897,3.819444444,6.830601093,4.761904762,6.097560976,9.722222222,12.51862891,7.670043415,12.09302326,8.615384615,9.027777778,13.2,5.103969754,7.881773399,6.176203451,13.15789474,4.761904762,7.843137255,8.31643002,8.064516129,8.59375,7.86163522,6.428571429,7.060755337,7.951070336,4.285714286,4.761904762,9.63081862,4.761904762,9.196740396,5.6,9.395348837,11.47880041,7.142857143,5.298013245,6.526806527,10.48034934,8.019639935,5.936073059,4.761904762,9.962168979,10.68580542,3.048780488,8.478038815,3.883495146,3.488372093,7.208121827,4.761904762,7.379679144,7.333333333,9.302325581,8.965517241,6.862745098,8.13253012,7.414104882,10,8.053691275,7.537688442,6.849315068,8.407643312,4.761904762,7.692307692,8.461538462,8.170515098,8.13559322,6.220095694,11.5942029,14.76683938,4.761904762,7.692307692,5.405405405,5.681818182,8,10.01494768,12.5,10.51094891,9.110473458,6.632653061,7.407407407,9.027777778,10.57692308,8.527131783,7.994923858,5.555555556,7.494145199,7.052186178,9.761904762,8.019639935,6.234413965,8.833922261,8.796296296,6.697819315,6.060606061,10.21505376,10.95238095 +Large Aliphatic,16.46577701,13.58139535,16.44736842,9.047160731,17.96407186,11.87739464,15.44256121,12.08158996,10.32608696,12.91759465,11.11111111,18.07958478,15.19337017,14.69594595,12.23776224,11.96013289,13.88101983,14.1025641,9.748427673,14.19753086,9.523809524,16.10337972,13.48837209,14.3907563,11.09589041,17.05426357,14.33070866,15.76470588,9.523809524,15.88132635,11.3022113,13.51351351,12.76595745,15.99496222,17.47572816,14.6484375,16.98113208,12.67326733,17.24137931,10.50583658,18.35645678,11.11111111,13.46153846,5.382436261,13.66906475,12.12121212,13.08203991,14.82649842,10.24667932,14.81481481,16.09195402,10.31746032,13.89432485,13.07189542,17.65988372,13.06413302,17.72727273,10.2661597,14.30084746,18.66028708,9.523809524,16.97459584,16.12903226,16.15384615,16.53225806,11.69590643,12.70491803,17.1875,15.76923077,13.85542169,8.803611738,14.66666667,11.76470588,10.65868263,14.71571906,11.24694377,17.03163017,11.02484472,20.49433574,12.11072664,16.15384615,12.1242485,15.57017544,17.96875,14.48382126,8.808290155,14.34159061,9.615384615,14.7826087,13.67231638,6.338028169,12.84916201,14.50094162,3.546099291,13.08203991,17.44471744,16.43564356,13.25178389,12.54612546,16.40449438,10.53036126,16.96750903,8.68878357,13.37423313,15.30054645,13.69863014,14.51612903,12.12121212,10.31746032,12.90322581,10.29748284,14.31818182,15.55783009,13.19875776,14.38183347,17.28070175,15.23283346,12.74509804,13.68015414,8.635097493,3.819444444,17.4863388,9.523809524,12.92682927,16.16161616,15.49925484,11.79450072,9.76744186,11.07692308,15.27777778,16.93333333,15.6899811,17.73399015,15.16802906,9.649122807,9.523809524,15.68627451,16.8356998,17.74193548,17.1875,17.29559748,12.85714286,16.25615764,14.37308869,17.14285714,10.31746032,8.667736758,9.523809524,12.68917346,14.93333333,13.39534884,14.89141675,12.94642857,11.25827815,14.8018648,20.96069869,14.81178396,13.69863014,10.31746032,10.4665826,17.86283892,8.536585366,14.50459653,13.59223301,12.79069767,12.03045685,9.523809524,16.68449198,12.66666667,11.62790698,10.34482759,12.74509804,18.37349398,16.63652803,18.57142857,11.40939597,12.56281407,15.06849315,12.3566879,11.11111111,13.62637363,16.92307692,15.45293073,12.20338983,14.11483254,18.63354037,7.512953368,9.523809524,13.94230769,11.65540541,9.090909091,11.2,6.427503737,12.5,21.02189781,19.15351506,15.81632653,11.85185185,14.58333333,14.42307692,16.27906977,9.010152284,10.31746032,14.75409836,10.86036671,11.66666667,14.7299509,10.47381546,13.07420495,12.96296296,17.44548287,10.3030303,15.23297491,8.571428571 +Small Aliphatic,18.76883341,16.55813953,21.05263158,24.54282964,24.5508982,20.30651341,24.10546139,17.41631799,18.75,23.60801782,17.82407407,17.8200692,15.74585635,26.35135135,30.41958042,15.94684385,14.44759207,21.15384615,23.74213836,22.5308642,23.01587302,21.86878728,16.74418605,22.37394958,31.23287671,28.68217054,22.5984252,21.41176471,23.01587302,29.66841187,20.27027027,20.79905993,20.74468085,18.26196474,10.19417476,17.96875,23.89937107,27.92079208,18.96551724,31.51750973,19.53041622,20.98765432,15.38461538,32.01133144,28.77697842,27.48917749,23.72505543,20.18927445,21.44212524,32.27513228,20.68965517,22.22222222,20.15655577,20.69716776,17.12693798,26.12826603,18.48484848,21.48288973,21.08050847,22.48803828,23.80952381,14.3187067,18.89400922,30,18.5483871,13.4502924,17.04918033,28.90625,17.30769231,21.68674699,24.15349887,21.06666667,20.85561497,25.86826347,20.73578595,25.18337408,19.22141119,25.31055901,16.16889804,21.79930796,30.76923077,19.33867735,21.92982456,14.0625,26.04006163,18.13471503,17.86179922,25.82417582,17.68115942,16.83615819,26.33802817,18.7150838,26.3653484,17.0212766,23.50332594,19.41031941,21.78217822,18.55249745,18.69618696,17.75280899,27.74788624,16.24548736,24.80252765,17.42331288,14.20765027,16.18929016,26.26728111,27.48917749,22.22222222,20.29136316,20.36613272,25.68181818,17.70726714,18.63354037,14.55004205,20.35087719,22.17837411,33.33333333,16.57032755,24.79108635,16.31944444,20.21857923,22.22222222,15.85365854,17.92929293,19.52309985,12.51808973,23.72093023,20.61538462,18.75,13.2,20.2268431,21.42857143,24.70481381,23.68421053,23.01587302,18.82352941,21.29817444,24.19354839,29.6875,24.52830189,32.85714286,15.43513957,22.47706422,14.28571429,23.01587302,25.68218299,23.01587302,20.60535506,20.8,16.74418605,18.61427094,22.76785714,27.81456954,22.96037296,15.72052402,22.25859247,21.46118721,22.22222222,18.28499369,19.93620415,19.51219512,21.96118488,32.03883495,26.1627907,16.85279188,22.22222222,24.9197861,20,14.53488372,17.24137931,19.11764706,23.4939759,28.02893309,22.38095238,19.46308725,21.6080402,25.34246575,14.77707006,20.63492063,23.07692308,30,24.68916519,24.06779661,21.05263158,16.97722567,23.05699482,22.22222222,17.78846154,16.72297297,17.61363636,21.6,32.58594918,14.28571429,15.91240876,18.57962697,14.28571429,20,18.75,12.5,29.45736434,25.50761421,22.22222222,30.91334895,15.79689704,19.28571429,22.58592471,21.44638404,23.67491166,24.53703704,18.06853583,22.42424242,20.25089606,23.80952381 +Aromatic,8.243650452,5.76744186,5.921052632,1.684311838,5.389221557,5.874840358,6.403013183,7.060669456,10.32608696,9.576837416,4.398148148,8.044982699,7.458563536,7.094594595,7.342657343,4.318936877,8.498583569,5.128205128,7.547169811,7.530864198,5.555555556,6.958250497,5.953488372,10.08403361,4.383561644,3.100775194,8.661417323,7.764705882,5.555555556,3.141361257,9.705159705,5.757931845,5.85106383,8.312342569,7.281553398,10.3515625,5.031446541,6.534653465,7.142857143,5.447470817,6.723585912,7.407407407,7.051282051,11.898017,5.755395683,6.70995671,9.534368071,8.517350158,11.19544592,3.174603175,7.662835249,5.555555556,6.653620352,8.496732026,8.793604651,9.026128266,8.636363636,11.21673004,10.69915254,10.04784689,5.555555556,9.468822171,6.451612903,3.076923077,9.274193548,9.941520468,3.93442623,3.125,8.846153846,7.228915663,6.997742664,8.533333333,9.625668449,4.431137725,8.361204013,4.645476773,7.299270073,7.453416149,9.47476828,5.53633218,3.076923077,7.915831663,12.28070175,3.90625,7.550077042,7.25388601,7.170795306,9.615384615,9.275362319,8.248587571,5.070422535,16.75977654,5.461393597,9.929078014,9.534368071,7.862407862,8.712871287,7.135575943,8.425584256,10.11235955,7.340507302,6.859205776,9.952606635,9.447852761,7.37704918,7.97011208,7.142857143,6.70995671,5.555555556,5.306971904,13.50114416,8.636363636,6.755373593,11.02484472,7.232968881,7.807017544,8.918705604,7.843137255,6.069364162,10.30640669,10.41666667,9.016393443,5.555555556,5.243902439,9.46969697,5.21609538,5.426917511,2.325581395,11.38461538,6.25,8.933333333,5.103969754,4.187192118,8.628519528,10.52631579,5.555555556,7.450980392,6.896551724,8.064516129,3.125,5.031446541,5,8.702791461,5.810397554,5.714285714,5.555555556,10.11235955,5.555555556,8.498253783,8.533333333,6.046511628,11.06514995,9.598214286,3.311258278,7.342657343,3.930131004,8.75613748,6.849315068,5.555555556,5.80075662,7.177033493,6.707317073,6.84371808,5.825242718,8.139534884,7.918781726,5.555555556,5.561497326,10.33333333,9.88372093,6.206896552,8.333333333,6.325301205,5.786618445,10,6.711409396,11.05527638,7.534246575,6.624203822,5.555555556,7.692307692,3.076923077,8.525754885,9.152542373,10.52631579,6.211180124,11.13989637,5.555555556,7.692307692,8.614864865,11.36363636,6.4,9.417040359,12.5,3.941605839,7.890961263,3.06122449,5.925925926,6.25,10.57692308,3.100775194,2.664974619,5.555555556,4.683840749,8.885754584,6.904761905,8.75613748,5.985037406,11.30742049,10.18518519,16.04361371,9.090909091,9.677419355,10 +Hydroxy,10.99870857,12.65116279,7.894736842,23.43599615,11.67664671,12.77139208,13.1826742,10.041841,15.76086957,11.58129176,18.98148148,14.96539792,11.32596685,11.99324324,10.48951049,15.28239203,8.21529745,7.051282051,10.8490566,13.20987654,17.46031746,12.72365805,12.46511628,13.55042017,6.301369863,8.527131783,10.62992126,12.23529412,16.66666667,10.29668412,10.56511057,15.39365452,12.23404255,10.70528967,10.67961165,10.7421875,11.63522013,8.316831683,11.8226601,7.392996109,11.09925293,15.63786008,10.8974359,10.4815864,9.832134293,11.03896104,11.30820399,19.24290221,9.297912713,8.994708995,10.34482759,17.46031746,13.11154599,10.02178649,12.35465116,8.551068884,8.939393939,9.315589354,11.44067797,9.090909091,16.66666667,8.198614319,9.677419355,6.923076923,5.241935484,11.11111111,9.836065574,7.8125,7.692307692,11.44578313,10.60948081,13.6,12.8342246,14.01197605,17.05685619,17.3594132,12.16545012,10.0931677,11.32852729,14.01384083,6.923076923,12.3246493,13.81578947,9.375,10.93990755,16.58031088,11.2125163,13.46153846,17.68115942,10.96045198,10.42253521,10.05586592,10.73446328,21.9858156,11.52993348,10.56511057,10.69306931,16.71763507,12.48462485,11.46067416,13.29746349,12.27436823,7.898894155,13.86503067,11.61202186,12.95143213,10.13824885,11.25541126,18.25396825,14.77627471,11.67048055,11.13636364,14.53428864,8.850931677,16.14802355,13.59649123,14.91712707,8.823529412,12.62042389,13.64902507,21.18055556,10.10928962,18.25396825,9.390243902,12.12121212,12.07153502,7.742402315,16.74418605,14.15384615,4.166666667,11.46666667,10.77504726,8.128078818,11.26248865,8.771929825,17.46031746,9.411764706,11.96754564,12.90322581,7.03125,11.63522013,8.571428571,11.65845649,11.77370031,8.571428571,16.66666667,8.025682183,17.46031746,11.40861467,13.6,12.8372093,14.68459152,11.16071429,12.58278146,9.906759907,13.10043668,14.89361702,11.87214612,17.46031746,9.457755359,8.931419458,15.85365854,13.38100102,8.737864078,9.302325581,18.98477157,18.25396825,11.3368984,11.66666667,11.04651163,9.655172414,12.25490196,11.44578313,11.93490054,9.047619048,10.73825503,11.05527638,7.534246575,16.68789809,18.25396825,10.65934066,6.923076923,11.90053286,12.88135593,10.52631579,12.42236025,13.73056995,18.25396825,9.134615385,8.108108108,11.93181818,9.6,17.18983558,7.142857143,13.13868613,10.40172166,8.673469388,15.55555556,4.166666667,11.53846154,7.751937984,12.69035533,16.66666667,11.47540984,14.66854725,12.26190476,14.89361702,10.97256858,16.96113074,6.944444444,11.83800623,6.666666667,11.82795699,11.9047619 +,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Number of Y,128,28,3,10,7,12,10,48,10,19,10,38,24,18,5,5,8,5,19,37,5,13,29,31,5,3,48,7,5,7,19,12,5,19,5,24,5,13,12,6,29,10,6,22,4,12,19,6,21,3,12,5,10,16,118,15,22,21,36,12,5,41,6,3,11,4,16,3,9,6,22,15,10,10,7,7,13,18,29,12,3,24,19,3,24,4,16,27,16,25,8,18,9,22,19,12,19,24,46,26,89,10,40,30,25,24,11,12,5,15,14,11,22,20,31,35,46,3,28,28,23,19,5,16,39,20,24,2,11,4,18,14,7,40,5,5,12,13,4,3,5,3,21,13,2,5,36,5,28,15,28,40,19,1,21,3,45,7,5,16,17,4,29,4,7,85,5,16,12,4,6,9,8,16,12,2,5,8,14,5,28,3,19,7,18,13,17,5,10,15,8,4,47,3,9,48,3,2,4,8,3,11,5,11,22,23,45,10,12,8,37,7,14,24 +Number of pY,1,2,1,1,1,2,2,1,1,3,1,1,4,2,1,1,1,2,6,2,2,1,3,1,1,1,2,2,2,1,1,1,1,1,1,1,1,1,3,1,2,1,1,1,1,4,3,1,1,1,1,2,1,1,2,1,1,1,1,4,2,1,1,1,1,1,1,1,1,2,1,10,2,2,1,1,2,5,1,2,1,1,1,1,1,2,1,1,1,1,3,1,1,1,3,3,1,2,1,3,2,1,6,1,3,1,3,4,2,1,1,1,1,1,1,1,1,1,1,1,1,1,2,1,2,1,1,1,1,1,1,1,1,2,1,2,1,1,3,1,1,1,1,2,2,2,3,2,1,10,1,1,3,1,3,3,1,1,2,1,1,2,1,5,1,1,2,1,1,1,2,2,2,1,5,1,1,1,1,2,1,1,1,1,2,1,1,2,1,1,1,1,2,1,9,1,1,1,1,1,1,1,2,1,1,2,1,1,1,1,2,1,1,1 +Total AAs,4646,1075,152,2078,334,783,531,1912,368,449,432,1156,724,592,286,301,353,156,636,1620,126,503,1075,952,730,129,1270,425,126,573,814,851,188,794,206,512,318,505,406,257,937,243,156,353,417,462,451,317,527,189,261,126,511,459,4128,421,660,526,944,209,126,866,217,130,248,171,1220,128,260,166,443,375,187,835,299,409,411,644,971,578,130,998,456,128,649,193,767,364,345,885,710,358,531,282,451,407,505,981,1626,445,2602,277,633,815,732,803,434,462,126,961,437,440,977,644,1189,1140,1267,102,1038,359,288,366,126,820,792,671,1382,215,325,144,750,529,406,1101,114,126,255,493,124,128,318,140,609,654,70,126,623,126,859,375,1075,967,448,151,858,229,1222,219,126,793,627,164,979,103,172,1970,126,935,300,172,145,204,332,553,210,149,199,146,785,126,910,130,563,295,418,483,386,126,208,592,176,125,669,56,685,1394,196,135,144,104,129,788,126,427,709,840,1222,401,283,216,642,165,558,420
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/C and D finder/test-data/input3.csv Tue May 22 18:17:33 2018 -0400 @@ -0,0 +1,36 @@ +Amino Acids,sp|Q14204|DYHC1_HUMAN,sp|P62269|RS18_HUMAN,sp|E9PAV3|NACAM_HUMAN,sp|P07195|LDHB_HUMAN,sp|P26599|PTBP1_HUMAN,sp|Q9NR30|DDX21_HUMAN,sp|Q14839|CHD4_HUMAN,sp|P78406|RAE1L_HUMAN,sp|Q9NYV4|CDK12_HUMAN,sp|Q9BQE3|TBA1C_HUMAN,sp|Q9NWQ8|PHAG1_HUMAN,sp|P42167|LAP2B_HUMAN,sp|P08238|HS90B_HUMAN,sp|P60174|TPIS_HUMAN,sp|P31939|PUR9_HUMAN,sp|P23193|TCEA1_HUMAN,sp|Q8TDN6|BRX1_HUMAN,sp|P62750|RL23A_HUMAN,sp|P11940|PABP1_HUMAN,sp|Q9UM73|ALK_HUMAN,sp|P62807|H2B1C_HUMAN,sp|P52272|HNRPM_HUMAN,sp|P10253|LYAG_HUMAN,sp|Q9BTM1|H2AJ_HUMAN,sp|Q08211|DHX9_HUMAN,sp|P22234|PUR6_HUMAN,sp|Q15648|MED1_HUMAN,sp|P57053|H2BFS_HUMAN,sp|P55884|EIF3B_HUMAN,sp|Q969T4|UB2E3_HUMAN,sp|Q9H8H2|DDX31_HUMAN,sp|Q07020|RL18_HUMAN,sp|Q9NQ50|RM40_HUMAN,sp|Q96LR5|UB2E2_HUMAN,sp|Q9Y3I0|RTCB_HUMAN,sp|P60842|IF4A1_HUMAN,sp|P62917|RL8_HUMAN,sp|P63010|AP2B1_HUMAN,sp|P35268|RL22_HUMAN,sp|Q5VTE0|EF1A3_HUMAN,sp|Q71U36|TBA1A_HUMAN,sp|P63244|RACK1_HUMAN,sp|Q13200|PSMD2_HUMAN,sp|Q99497|PARK7_HUMAN,sp|P25789|PSA4_HUMAN,sp|P24941|CDK2_HUMAN,sp|Q16778|H2B2E_HUMAN,sp|Q02790|FKBP4_HUMAN,sp|P42166|LAP2A_HUMAN,sp|P78527|PRKDC_HUMAN,sp|Q9NQS7|INCE_HUMAN,sp|Q8NE71|ABCF1_HUMAN,sp|P05141|ADT2_HUMAN,sp|P54136|SYRC_HUMAN,sp|Q14697|GANAB_HUMAN,sp|GSTP1_HUMAN,sp|O60814|H2B1K_HUMAN,sp|P62906|RL10A_HUMAN,sp|Q6FI13|H2A2A_HUMAN,sp|P19105|ML12A_HUMAN,sp|O60841|IF2P_HUMAN,sp|Q99878|H2A1J_HUMAN,sp|P23528|COF1_HUMAN,sp|Q07666|KHDR1_HUMAN,sp|Q9Y617|SERC_HUMAN,sp|P60709|ACTB_HUMAN,sp|P30086|PEBP1_HUMAN,sp|Q13263|TIF1B_HUMAN,sp|Q9UGN4|CLM8_HUMAN,sp|P54727|RD23B_HUMAN,sp|P38919|IF4A3_HUMAN,sp|P55060|XPO2_HUMAN,sp|Q8IUE6|H2A2B_HUMAN,sp|P78347|GTF2I_HUMAN,sp|P39656|OST48_HUMAN,sp|Q16881|TRXR1_HUMAN,sp|Q9Y490|TLN1_HUMAN,sp|Q01130|SRSF2_HUMAN,sp|Q6DN03|H2B2C_HUMAN,sp|Q9BWF3|RBM4_HUMAN,sp|Q9UIB8|SLAF5_HUMAN,sp|Q01780|EXOSX_HUMAN,sp|P19338|NUCL_HUMAN,sp|O00571|DDX3X_HUMAN,sp|O75503|CLN5_HUMAN,sp|P14618|KPYM_HUMAN,sp|P68363|TBA1B_HUMAN,sp|Q14240|IF4A2_HUMAN,sp|Q9HC35|EMAL4_HUMAN,sp|Q02880|TOP2B_HUMAN,sp|P11142|HSP7C_HUMAN,sp|Q9UKM9|RALY_HUMAN,sp|P50395|GDIB_HUMAN,sp|O75369|FLNB_HUMAN,sp|P47756|CAPZB_HUMAN,sp|Q96AE4|FUBP1_HUMAN,sp|O43390|HNRPR_HUMAN,sp|Q5R372|RBG1L_HUMAN,sp|P07900|HS90A_HUMAN,sp|P14625|ENPL_HUMAN,sp|P06733|ENOA_HUMAN,sp|P68104|EF1A1_HUMAN,sp|Q99880|H2B1L_HUMAN,sp|Q2M2I8|AAK1_HUMAN,sp|Q92835|SHIP1_HUMAN,sp|Q16531|DDB1_HUMAN,sp|Q5JPE7|NOMO2_HUMAN,sp|P61604|CH10_HUMAN,sp|Q9BQ04|RBM4B_HUMAN,sp|Q16629|SRSF7_HUMAN,sp|P58876|H2B1D_HUMAN,sp|Q9BUQ8|DDX23_HUMAN,sp|P06493|CDK1_HUMAN,sp|P23921|RIR1_HUMAN,sp|O76094|SRP72_HUMAN,sp|P62847|RS24_HUMAN,sp|Q13765|NACA_HUMAN,sp|Q14152|EIF3A_HUMAN,sp|Q13347|EIF3I_HUMAN,sp|P33992|MCM5_HUMAN,sp|Q9Y2X3|NOP58_HUMAN,sp|P53396|ACLY_HUMAN,sp|O75368|SH3L1_HUMAN,sp|Q93079|H2B1H_HUMAN,sp|Q9UHA4|LTOR3_HUMAN,sp|Q96KK5|H2A1H_HUMAN,sp|P12956|XRCC6_HUMAN,sp|P11021|BIP_HUMAN,sp|P63173|RL38_HUMAN,sp|P06899|H2B1J_HUMAN,sp|P21281|VATB2_HUMAN,sp|O60506|HNRPQ_HUMAN,sp|Q5QNW6|H2B2F_HUMAN,sp|Q9UKV8|AGO2_HUMAN,sp|P63261|ACTG_HUMAN,sp|O75306|NDUS2_HUMAN,sp|P57764|GSDMD_HUMAN,sp|P17844|DDX5_HUMAN,sp|P62263|RS14_HUMAN,sp|O15523|DDX3Y_HUMAN,sp|P13639|EF2_HUMAN,sp|Q15155|NOMO1_HUMAN,sp|Q9UKK9|NUDT5_HUMAN,sp|P23527|H2B1O_HUMAN,sp|Q00526|CDK3_HUMAN,sp|P13796|PLSL_HUMAN,sp|Q6DRA6|H2B2D_HUMAN,sp|P62805|H4_HUMAN,sp|Q9BY32|ITPA_HUMAN,sp|Q8N257|H2B3B_HUMAN,sp|P11586|C1TC_HUMAN,sp|P09429|HMGB1_HUMAN,sp|Q9H299|SH3L3_HUMAN,sp|O14950|ML12B_HUMAN,sp|P61254|RL26_HUMAN,sp|P52565|GDIR1_HUMAN,sp|P26583|HMGB2_HUMAN,sp|P00338|LDHA_HUMAN,sp|P25705|ATPA_HUMAN,sp|P09211|GSTP1_HUMAN,sp|P0DP24|CALM2_HUMAN,sp|Q06830|PRDX1_HUMAN,sp|P62249|RS16_HUMAN,sp|Q96JH7|VCIP1_HUMAN,sp|P49327|FAS_HUMAN,sp|O43242|PSMD3_HUMAN,sp|Q9Y5S9|RBM8A_HUMAN,sp|O95602|RPA1_HUMAN,sp|P33778|H2B1B_HUMAN,sp|P02786|TFR1_HUMAN,sp|P0C0S8|H2A1_HUMAN,sp|Q969V3|NCLN_HUMAN,sp|P08865|RSSA_HUMAN,sp|P61158|ARP3_HUMAN,sp|P26196|DDX6_HUMAN,sp|P31483|TIA1_HUMAN,sp|Q99877|H2B1N_HUMAN,sp|P27824|CALX_HUMAN,sp|P62899|RL31_HUMAN,sp|Q02543|RL18A_HUMAN,sp|Q96PK6|RBM14_HUMAN,sp|P62273|RS29_HUMAN,sp|P84090|ERH_HUMAN,sp|P84098|RL19_HUMAN,sp|Q16777|H2A2C_HUMAN,sp|Q92598|HS105_HUMAN,sp|Q9UNX3|RL26L_HUMAN,sp|Q9UQ80|PA2G4_HUMAN,sp|P49321|NASP_HUMAN,sp|Q99879|H2B1M_HUMAN,sp|P24752|THIL_HUMAN,sp|P51965|UB2E1_HUMAN,sp|Q08945|SSRP1_HUMAN,sp|P34932|HSP74_HUMAN,sp|Q68CZ2|TENS3_HUMAN,sp|P69849|NOMO3_HUMAN,sp|P62826|RAN_HUMAN,sp|Q9Y277|VDAC3_HUMAN,sp|Q92544|TM9S4_HUMAN,sp|P06744|G6PI_HUMAN,sp|O14979|HNRDL_HUMAN 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+Negative,13.75376668,10.52631579,5.293551492,11.9760479,7.90960452,13.92081737,17.46861925,9.510869565,11.74496644,14.0311804,17.36111111,13.87665198,20.3038674,12.58741259,11.82432432,15.61461794,11.898017,8.974358974,10.22012579,9.938271605,7.936507937,12.05479452,9.453781513,6.976744186,11.57480315,12,9.677419355,7.936507937,17.1990172,12.56038647,8.813160987,6.382978723,15.53398058,11.94029851,11.88118812,14.28571429,6.614785992,12.48665955,15.625,11.47186147,14.19068736,9.463722397,14.42731278,12.6984127,14.17624521,11.0738255,7.936507937,16.99346405,12.53602305,12.23352713,16.33986928,17.86982249,7.718120805,14.39393939,12.3940678,11.00478469,7.936507937,9.677419355,6.923076923,20.46783626,22.21311475,7.03125,16.26506024,12.18961625,10,13.06666667,12.8342246,12.5748503,11.37123746,11.00244499,13.86861314,11.84346035,6.923076923,14.62925852,10.74561404,11.86440678,11.88508461,9.502262443,4.663212435,12.08791209,9.855072464,12.88135593,24.78873239,13.44410876,10.61452514,12.42937853,14.19068736,14.4963145,13.14984709,15.00615006,14.70588235,12.09150327,13.93258427,12.29823213,14.80144404,8.850931677,14.21800948,14.84662577,20.6284153,21.29514321,12.67281106,11.47186147,7.936507937,9.157127992,12.36333053,12.80701754,11.36543015,12.74509804,12.53481894,7.983193277,7.936507937,18.53658537,12.45791246,12.12121212,11.32637854,8.270676692,18.13953488,23.15484805,13.23076923,13.48773842,15.50094518,11.0808356,14.03508772,7.936507937,10.48387097,7.03125,15.7635468,16.97247706,12.85714286,7.936507937,12.13307241,13.64365971,7.936507937,9.313154831,13.06666667,11.87904968,12.60330579,11.88925081,10.59602649,13.33333333,13.28671329,11.37479542,16.43835616,7.936507937,11.47540984,14.19457735,4.87804878,6.796116505,12.37113402,7.936507937,11.44385027,26.04651163,13.97849462,19.76744186,10.34482759,18.1372549,22.96650718,10.84337349,10.84990958,10.95238095,25.5033557,11.55778894,8.219178082,11.86579378,10.55356432,13.67041199,21.26436782,13.02325581,7.936507937,11.71052632,6.923076923,10.8348135,13.55932203,13.63636364,10.76604555,8.031088083,7.936507937,23.14189189,10.4,5.681818182,5.231689088,3.571428571,14.42307692,9.693877551,6.976744186,16.08391608,10.34482759,15.2284264,24.74619289,7.936507937,9.133489461,10.3626943,17.348378,16.30952381,10.38062284,11.45662848,12.5,8.833922261,9.501557632,10.5734767,10.23809524 +Postive,14.50710288,26.97368421,8.614051973,12.2754491,12.42937853,19.15708812,17.31171548,13.31521739,17.51677852,11.80400891,11.11111111,17.40088106,16.57458564,12.58741259,13.17567568,17.60797342,23.22946176,28.84615385,14.77987421,11.97530864,24.6031746,14.24657534,9.978991597,21.70542636,12.99212598,13.17647059,13.91524352,24.6031746,13.75921376,13.52657005,18.33137485,28.19148936,21.3592233,13.43283582,14.65346535,13.30049261,24.90272374,11.41942369,20.3125,16.23376623,11.75166297,12.30283912,12.55506608,13.75661376,16.09195402,15.77181208,24.6031746,15.68627451,14.55331412,14.0746124,20.80610022,18.93491124,14.09395973,15.45454545,13.13559322,10.52631579,24.6031746,22.11981567,23.07692308,14.61988304,20.6557377,22.65625,18.07228916,15.1241535,11.89189189,12.26666667,16.04278075,12.45508982,10.70234114,8.068459658,14.59854015,11.74047374,21.53846154,14.92985972,11.84210526,13.86748844,12.08185754,30.76923077,22.79792746,14.56043956,11.30434783,16.15819209,16.47887324,15.25679758,12.5698324,15.06591337,11.75166297,13.51351351,14.57696228,16.97416974,13.77708978,15.35947712,14.38202247,12.06764028,14.07942238,10.55900621,16.11374408,13.37423313,16.66666667,15.69115816,14.05529954,16.01731602,24.6031746,9.989594173,15.05466779,11.40350877,11.20757695,14.70588235,14.48467967,28.57142857,24.6031746,24.63414634,15.82491582,13.76262626,16.98956781,30.07518797,10.69767442,24.16787265,12.92307692,16.48501362,20.41587902,13.16984559,12.28070175,24.6031746,12.09677419,22.65625,16.74876847,14.52599388,30,24.6031746,11.93737769,16.5329053,24.6031746,16.53084983,12.26666667,14.68682505,10.53719008,15.63517915,19.86754967,15.60606061,14.56876457,11.29296236,12.78538813,24.6031746,15.73770492,13.07814992,22.56097561,26.21359223,11.8556701,24.6031746,13.47593583,25.11627907,10.75268817,14.53488372,31.03448276,15.19607843,25.35885167,13.85542169,13.56238698,10.47619048,10.06711409,14.57286432,21.91780822,14.89361702,11.74830745,16.66666667,20.68965517,15.05813953,24.6031746,12.63157895,23.07692308,12.96625222,10.16949153,13.63636364,14.49275362,10.3626943,24.6031746,14.18918919,25.6,26.13636364,10.01494768,25,14.42307692,35.20408163,22.48062016,14.68531469,31.03448276,16.49746193,10.91370558,24.6031746,11.94379391,13.47150259,18.61777151,14.04761905,12.52595156,11.12929624,15.27777778,12.36749117,10.43613707,14.87455197,16.42857143 +Amide,9.599655618,7.894736842,4.234841193,8.383233533,12.42937853,8.556832695,7.740585774,10.32608696,7.248322148,7.126948775,8.796296296,6.828193833,6.767955801,7.342657343,7.432432432,9.302325581,8.21529745,5.769230769,10.6918239,7.901234568,4.761904762,6.164383562,7.983193277,9.302325581,9.291338583,8.235294118,8.285895003,4.761904762,8.108108108,8.212560386,7.520564042,5.319148936,7.766990291,8.457711443,8.316831683,9.113300493,5.447470817,10.45891142,9.375,5.411255411,7.095343681,8.201892744,7.378854626,5.291005291,8.812260536,5.704697987,4.761904762,8.061002179,8.213256484,8.260658915,10.23965142,10.0591716,6.375838926,8.636363636,7.097457627,10.04784689,4.761904762,9.216589862,8.461538462,9.356725146,7.213114754,8.59375,3.012048193,5.643340858,8.918918919,5.6,5.882352941,6.946107784,6.35451505,12.46943765,7.785888078,10.5046344,9.230769231,7.51503006,6.798245614,6.779661017,10.31090122,0.904977376,4.663212435,7.692307692,10.43478261,10.50847458,4.929577465,6.64652568,7.262569832,6.026365348,7.095343681,9.090909091,7.951070336,8.241082411,9.287925697,7.843137255,6.741573034,6.149116065,10.46931408,12.73291925,9.320695103,7.852760736,7.650273224,6.351183064,8.064516129,5.627705628,4.761904762,15.08844953,8.074011775,8.859649123,7.73480663,3.921568627,7.799442897,1.680672269,4.761904762,6.097560976,6.734006734,9.722222222,12.51862891,6.015037594,12.09302326,7.670043415,8.615384615,6.267029973,5.103969754,6.176203451,13.15789474,4.761904762,8.064516129,8.59375,7.060755337,7.951070336,4.285714286,4.761904762,8.023483366,9.63081862,4.761904762,9.196740396,5.6,6.695464363,7.851239669,10.26058632,5.298013245,6.818181818,6.526806527,8.019639935,5.936073059,4.761904762,6.229508197,10.68580542,3.048780488,3.883495146,8.24742268,4.761904762,7.379679144,2.790697674,13.97849462,9.302325581,8.965517241,6.862745098,4.306220096,8.13253012,7.414104882,10,8.053691275,7.537688442,6.849315068,8.101472995,7.606531262,8.801498127,4.597701149,9.011627907,4.761904762,8.552631579,8.461538462,8.170515098,8.13559322,6.220095694,11.5942029,14.76683938,4.761904762,5.405405405,8,5.681818182,10.01494768,12.5,10.57692308,6.632653061,8.527131783,10.83916084,8.965517241,8.375634518,7.994923858,5.555555556,7.494145199,8.29015544,7.052186178,9.761904762,7.612456747,8.019639935,8.796296296,8.833922261,6.697819315,10.21505376,10.95238095 +Large Aliphatic,16.46577701,16.44736842,9.047160731,17.96407186,15.44256121,11.87739464,12.08158996,10.32608696,11.81208054,12.91759465,11.11111111,12.11453744,15.19337017,12.23776224,14.69594595,11.96013289,13.88101983,14.1025641,9.748427673,14.19753086,9.523809524,11.09589041,14.3907563,17.05426357,14.33070866,15.76470588,11.19544592,9.523809524,11.3022113,13.52657005,13.51351351,12.76595745,17.47572816,12.93532338,12.67326733,17.24137931,10.50583658,18.35645678,12.5,12.12121212,13.08203991,14.82649842,16.62995595,14.81481481,16.09195402,18.45637584,10.31746032,13.07189542,13.83285303,17.65988372,10.45751634,12.89940828,14.09395973,17.72727273,14.30084746,18.66028708,9.523809524,16.12903226,16.15384615,11.69590643,12.70491803,17.1875,13.85542169,8.803611738,15.40540541,14.66666667,11.76470588,10.65868263,14.71571906,11.24694377,17.03163017,20.49433574,16.15384615,12.1242485,15.57017544,14.48382126,13.459268,2.714932127,8.808290155,9.615384615,14.7826087,13.67231638,6.338028169,11.78247734,12.84916201,14.50094162,13.08203991,17.44471744,13.25178389,12.54612546,13.62229102,11.11111111,16.40449438,10.53036126,16.96750903,9.161490683,8.68878357,13.37423313,15.30054645,13.69863014,14.51612903,12.12121212,10.31746032,12.90322581,14.38183347,17.28070175,15.23283346,12.74509804,8.635097493,5.042016807,9.523809524,12.92682927,19.52861953,16.16161616,15.49925484,9.022556391,9.76744186,11.79450072,11.07692308,15.25885559,15.6899811,15.16802906,9.649122807,9.523809524,17.74193548,17.1875,16.25615764,14.37308869,17.14285714,10.31746032,15.85127202,8.667736758,9.523809524,12.68917346,14.93333333,14.47084233,16.52892562,12.21498371,11.25827815,11.96969697,14.8018648,14.81178396,13.69863014,10.31746032,19.01639344,17.86283892,8.536585366,13.59223301,14.43298969,9.523809524,16.68449198,3.720930233,15.05376344,11.62790698,10.34482759,12.74509804,3.349282297,18.37349398,16.63652803,18.57142857,11.40939597,12.56281407,15.06849315,13.58428805,16.2086818,14.98127341,9.195402299,15.29069767,11.11111111,13.55263158,16.92307692,15.45293073,12.20338983,14.11483254,18.63354037,7.512953368,9.523809524,11.65540541,11.2,9.090909091,6.427503737,12.5,14.42307692,15.81632653,16.27906977,12.004662,10.34482759,10.91370558,9.010152284,10.31746032,14.75409836,13.47150259,10.86036671,11.66666667,12.11072664,14.7299509,12.96296296,13.07420495,17.44548287,15.23297491,8.571428571 +Small Aliphatic,18.76883341,21.05263158,24.54282964,24.5508982,24.10546139,20.30651341,17.41631799,18.75,15.36912752,23.60801782,17.82407407,18.28193833,15.74585635,30.41958042,26.35135135,15.94684385,14.44759207,21.15384615,23.74213836,22.5308642,23.01587302,31.23287671,22.37394958,28.68217054,22.5984252,21.41176471,16.38203669,23.01587302,20.27027027,14.00966184,20.79905993,20.74468085,10.19417476,16.41791045,27.92079208,18.96551724,31.51750973,19.53041622,19.53125,27.48917749,23.72505543,20.18927445,23.23788546,32.27513228,20.68965517,19.46308725,22.22222222,20.69716776,19.30835735,17.12693798,15.46840959,18.93491124,29.19463087,18.48484848,21.08050847,22.48803828,23.80952381,18.89400922,30,13.4502924,17.04918033,28.90625,21.68674699,24.15349887,25.67567568,21.06666667,20.85561497,25.86826347,20.73578595,25.18337408,19.22141119,16.16889804,30.76923077,19.33867735,21.92982456,26.04006163,28.29594648,15.38461538,18.13471503,25.82417582,17.68115942,16.83615819,26.33802817,21.75226586,18.7150838,26.3653484,23.50332594,19.41031941,18.55249745,18.69618696,23.06501548,28.43137255,17.75280899,27.74788624,16.24548736,28.88198758,24.80252765,17.42331288,14.20765027,16.18929016,26.26728111,27.48917749,22.22222222,20.29136316,14.55004205,20.35087719,22.17837411,33.33333333,24.79108635,16.80672269,22.22222222,15.85365854,16.16161616,17.92929293,19.52309985,19.54887218,23.72093023,12.51808973,20.61538462,20.70844687,20.2268431,24.70481381,23.68421053,23.01587302,24.19354839,29.6875,15.43513957,22.47706422,14.28571429,23.01587302,22.8962818,25.68218299,23.01587302,20.60535506,20.8,22.46220302,23.14049587,21.17263844,27.81456954,22.27272727,22.96037296,22.25859247,21.46118721,22.22222222,17.37704918,19.93620415,19.51219512,32.03883495,24.22680412,22.22222222,24.9197861,16.27906977,20.43010753,14.53488372,17.24137931,19.11764706,14.83253589,23.4939759,28.02893309,22.38095238,19.46308725,21.6080402,25.34246575,20.78559738,24.89048188,19.1011236,22.4137931,18.77906977,20.63492063,22.23684211,30,24.68916519,24.06779661,21.05263158,16.97722567,23.05699482,22.22222222,16.72297297,21.6,17.61363636,32.58594918,14.28571429,12.5,14.28571429,29.45736434,19.34731935,17.93103448,23.0964467,25.50761421,22.22222222,30.91334895,12.95336788,15.79689704,19.28571429,21.66089965,22.58592471,24.53703704,23.67491166,18.06853583,20.25089606,23.80952381 +Aromatic,8.243650452,5.921052632,1.684311838,5.389221557,6.403013183,5.874840358,7.060669456,10.32608696,4.563758389,9.576837416,4.398148148,5.50660793,7.458563536,7.342657343,7.094594595,4.318936877,8.498583569,5.128205128,7.547169811,7.530864198,5.555555556,4.383561644,10.08403361,3.100775194,8.661417323,7.764705882,4.427577483,5.555555556,9.705159705,6.763285024,5.757931845,5.85106383,7.281553398,6.965174129,6.534653465,7.142857143,5.447470817,6.723585912,8.59375,6.70995671,9.534368071,8.517350158,6.27753304,3.174603175,7.662835249,10.06711409,5.555555556,8.496732026,4.899135447,8.793604651,2.941176471,5.443786982,12.41610738,8.636363636,10.69915254,10.04784689,5.555555556,6.451612903,3.076923077,9.941520468,3.93442623,3.125,7.228915663,6.997742664,8.918918919,8.533333333,9.625668449,4.431137725,8.361204013,4.645476773,7.299270073,9.47476828,3.076923077,7.915831663,12.28070175,7.550077042,3.18772137,5.882352941,7.25388601,9.615384615,9.275362319,8.248587571,5.070422535,9.365558912,16.75977654,5.461393597,9.534368071,7.862407862,7.135575943,8.425584256,6.346749226,5.555555556,10.11235955,7.340507302,6.859205776,6.055900621,9.952606635,9.447852761,7.37704918,7.97011208,7.142857143,6.70995671,5.555555556,5.306971904,7.232968881,7.807017544,8.918705604,7.843137255,10.30640669,7.983193277,5.555555556,5.243902439,9.764309764,9.46969697,5.21609538,7.518796992,2.325581395,5.426917511,11.38461538,6.675749319,5.103969754,8.628519528,10.52631579,5.555555556,8.064516129,3.125,8.702791461,5.810397554,5.714285714,5.555555556,7.632093933,10.11235955,5.555555556,8.498253783,8.533333333,9.719222462,5.785123967,8.794788274,3.311258278,9.242424242,7.342657343,8.75613748,6.849315068,5.555555556,10.16393443,7.177033493,6.707317073,5.825242718,9.793814433,5.555555556,5.561497326,8.372093023,6.451612903,9.88372093,6.206896552,8.333333333,7.655502392,6.325301205,5.786618445,10,6.711409396,11.05527638,7.534246575,5.89198036,7.009159697,8.239700375,7.471264368,7.674418605,5.555555556,11.18421053,3.076923077,8.525754885,9.152542373,10.52631579,6.211180124,11.13989637,5.555555556,8.614864865,6.4,11.36363636,9.417040359,12.5,10.57692308,3.06122449,3.100775194,7.10955711,6.206896552,6.345177665,2.664974619,5.555555556,4.683840749,7.25388601,8.885754584,6.904761905,6.435986159,8.75613748,10.18518519,11.30742049,16.04361371,9.677419355,10 +Hydroxy,10.99870857,7.894736842,23.43599615,11.67664671,13.1826742,12.77139208,10.041841,15.76086957,18.8590604,11.58129176,18.98148148,16.96035242,11.32596685,10.48951049,11.99324324,15.28239203,8.21529745,7.051282051,10.8490566,13.20987654,17.46031746,6.301369863,13.55042017,8.527131783,10.62992126,12.23529412,23.78241619,16.66666667,10.56511057,20.28985507,15.39365452,12.23404255,10.67961165,17.91044776,8.316831683,11.8226601,7.392996109,11.09925293,9.375,11.03896104,11.30820399,19.24290221,10.46255507,8.994708995,10.34482759,10.40268456,17.46031746,10.02178649,17.86743516,12.35465116,12.96296296,8.047337278,9.731543624,8.939393939,11.44067797,9.090909091,16.66666667,9.677419355,6.923076923,11.11111111,9.836065574,7.8125,11.44578313,10.60948081,10,13.6,12.8342246,14.01197605,17.05685619,17.3594132,12.16545012,11.32852729,6.923076923,12.3246493,13.81578947,10.93990755,13.14443133,24.88687783,16.58031088,13.46153846,17.68115942,10.96045198,10.42253521,14.95468278,10.05586592,10.73446328,11.52993348,10.56511057,16.71763507,12.48462485,12.69349845,13.39869281,11.46067416,13.29746349,12.27436823,7.919254658,7.898894155,13.86503067,11.61202186,12.95143213,10.13824885,11.25541126,18.25396825,14.77627471,16.14802355,13.59649123,14.91712707,8.823529412,13.64902507,21.8487395,18.25396825,9.390243902,11.44781145,12.12121212,12.07153502,11.27819549,16.74418605,7.742402315,14.15384615,11.98910082,10.77504726,11.26248865,8.771929825,17.46031746,12.90322581,7.03125,11.65845649,11.77370031,8.571428571,16.66666667,11.15459883,8.025682183,17.46031746,11.40861467,13.6,7.991360691,13.63636364,11.07491857,12.58278146,13.33333333,9.906759907,14.89361702,11.87214612,17.46031746,10.81967213,8.931419458,15.85365854,8.737864078,7.731958763,18.25396825,11.3368984,7.441860465,12.90322581,11.04651163,9.655172414,12.25490196,10.04784689,11.44578313,11.93490054,9.047619048,10.73825503,11.05527638,7.534246575,13.99345336,12.5049781,10.6741573,7.471264368,11.10465116,18.25396825,13.15789474,6.923076923,11.90053286,12.88135593,10.52631579,12.42236025,13.73056995,18.25396825,8.108108108,9.6,11.93181818,17.18983558,7.142857143,11.53846154,8.673469388,7.751937984,10.13986014,8.965517241,11.92893401,12.69035533,16.66666667,11.47540984,22.27979275,14.66854725,12.26190476,16.67820069,14.89361702,6.944444444,16.96113074,11.83800623,11.82795699,11.9047619 +,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Number of Y,128,3,10,7,10,12,48,10,35,19,10,10,24,5,18,5,8,5,19,37,5,5,31,3,48,7,26,5,19,6,12,5,5,6,13,12,6,29,5,12,19,6,26,3,12,10,5,16,13,118,10,18,14,22,36,12,5,6,3,4,16,3,6,22,13,15,10,10,7,7,13,29,3,24,19,24,29,9,4,27,16,25,8,24,18,9,19,12,24,46,15,10,26,89,10,23,40,30,25,24,11,12,5,15,31,35,46,3,28,11,5,16,14,39,20,4,2,24,11,19,14,40,5,5,4,3,21,13,2,5,18,36,5,28,15,19,7,25,1,25,21,45,7,5,12,17,4,4,6,5,16,7,4,4,6,9,6,8,16,12,2,5,8,28,55,21,6,53,5,28,3,19,7,18,13,17,5,15,4,8,47,3,8,3,3,19,6,7,11,5,11,6,22,23,32,45,8,12,37,14,24 +Number of pY,1,1,1,1,2,2,1,1,1,3,1,1,4,1,1,1,1,2,2,2,2,1,1,1,1,2,1,2,1,1,1,1,1,1,1,3,1,2,1,3,3,1,1,2,1,1,2,1,1,2,1,1,1,1,1,4,2,1,1,1,1,1,3,1,2,9,1,1,1,1,1,1,1,2,1,2,1,1,2,1,1,1,3,1,1,1,3,3,2,2,1,1,3,1,1,1,5,1,3,1,3,3,2,1,1,1,1,1,1,1,2,1,1,3,1,1,1,1,1,1,1,1,1,2,1,1,1,3,2,2,1,3,2,1,9,2,1,1,1,1,2,1,1,2,1,1,2,4,1,2,1,1,1,1,1,2,1,2,1,5,1,1,1,1,1,1,1,1,2,1,1,1,2,2,1,1,2,1,3,1,1,1,1,1,1,1,1,1,1,2,1,1,1,2,1,1,1,1,2,1,1 +Total AAs,4646,152,2078,334,531,783,1912,368,1490,449,432,454,724,286,592,301,353,156,636,1620,126,730,952,129,1270,425,1581,126,814,207,851,188,206,201,505,406,257,937,128,462,451,317,908,189,261,298,126,459,694,4128,918,845,298,660,944,209,126,217,130,171,1220,128,166,443,370,375,187,835,299,409,411,971,130,998,456,649,2541,221,193,364,345,885,710,662,358,531,451,407,981,1626,646,306,445,2602,277,644,633,815,732,803,434,462,126,961,1189,1140,1267,102,359,238,126,820,297,792,671,133,215,1382,325,734,529,1101,114,126,124,128,609,654,70,126,511,623,126,859,375,463,484,614,151,660,858,1222,219,126,305,627,164,103,194,126,935,215,93,172,145,204,209,332,553,210,149,199,146,1222,2511,534,174,1720,126,760,130,563,295,418,483,386,126,592,125,176,669,56,104,196,129,858,145,394,788,126,427,193,709,840,1445,1222,216,283,642,558,420
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/C and D finder/test-data/input4.csv Tue May 22 18:17:33 2018 -0400 @@ -0,0 +1,235 @@ +Substrates,Species,Reference,-7,-6,-5,-4,-3,-2,-1,0,1,2,3,4,5,6,7,,,,,Phosphite,, +,,sp|Q8NE71|ABCF1_HUMAN,,,,,,G,N,Y,M,T,F,K,,,,,,,GNYMTFK,LHYYRGNYMTFKKMY,, +,,sp|Q00526|CDK3_HUMAN; sp|P24941|CDK2_HUMAN; sp|P06493|CDK1_HUMAN,,,I,G,E,G,T,Y,G,V,V,Y,K,,,,,,IGEGTYGVVYK,EKIGEGTYGVVYKAK,EKIGEGTYGVVYKAR,EKIGEGTYGVVYKGR +,,sp|P13639|EF2_HUMAN,,,,K,E,D,L,Y,L,K,P,I,Q,R,,,,,KEDLYLKPIQR,PGKKEDLYLKPIQRT,, +,,sp|O43390|HNRPR_HUMAN,,,,,,,D,Y,A,F,V,H,F,E,D,,,,DYAFVHFED,RVKKLKDYAFVHFED,, +,,sp|P62899|RL31_HUMAN,,,,,,,L,Y,T,L,V,T,Y,V,P,,,,LYTLVTYVP,EDSPNKLYTLVTYVP,, +,,sp|P78347|GTF2I_HUMAN,,,,T,V,E,D,Y,F,C,F,C,Y,G,K,,,,TVEDYFCFCYGK,LRKTVEDYFCFCYGK,, +,,sp|P60842|IF4A1_HUMAN,,,,,D,Q,I,Y,D,I,F,Q,K,,,,,,DQIYDIFQK,RGFKDQIYDIFQKLN,, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,T,V,P,I,Y,E,G,Y,A,L,P,H,A,I,L,,,,TVPIYEGYALPHAIL,TVPIYEGYALPHAIL,, +,,sp|Q02790|FKBP4_HUMAN,,G,E,H,S,I,V,Y,L,K,P,S,Y,A,F,,,,GEHSIVYLKPSYAF,KGEHSIVYLKPSYAF,, +,,sp|Q9NR30|DDX21_HUMAN,,,,,,S,T,Y,E,Q,V,D,L,I,G,,,,STYEQVDLIG,KKYMKSTYEQVDLIG,, +,,sp|P31939|PUR9_HUMAN,,,,,N,G,N,Y,C,V,L,Q,M,D,Q,,,,NGNYCVLQMDQ,SKKKNGNYCVLQMDQ,, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,,K,D,L,Y,A,N,T,V,L,S,G,,,,KDLYANTVLSG,VDIRKDLYANTVLSG,, +,,sp|P62805|H4_HUMAN,,,I,S,G,L,I,Y,E,E,T,R,,,,,,,ISGLIYEETR,KRISGLIYEETRGVL,, +,,sp|P22234|PUR6_HUMAN,,,,,,E,V,Y,E,L,L,D,S,P,G,,,,EVYELLDSPG,EGKTKEVYELLDSPG,, +,,sp|P30086|PEBP1_HUMAN,,,,,,,L,Y,E,Q,L,S,G,K,,,,,LYEQLSGK,DDYVPKLYEQLSGK,, +,,sp|Q08945|SSRP1_HUMAN,,N,M,S,G,S,L,Y,E,M,V,S,R,,,,,,NMSGSLYEMVSR,KNMSGSLYEMVSRVM,, +,,sp|Q9Y3I0|RTCB_HUMAN,G,M,A,A,A,G,N,Y,A,W,V,N,R,,,,,,GMAAAGNYAWVNR,GMAAAGNYAWVNRSS,, +,,sp|Q96AE4|FUBP1_HUMAN,,,Q,Q,A,A,Y,Y,A,Q,T,S,P,Q,G,,,,QQAAYYAQTSPQG,YRQQAAYYAQTSPQG,, +,,sp|P62899|RL31_HUMAN,E,D,S,P,N,K,L,Y,T,L,V,T,Y,V,P,,,,EDSPNKLYTLVTYVP,EDSPNKLYTLVTYVP,, +,,sp|P52272|HNRPM_HUMAN,N,E,C,G,H,V,L,Y,A,D,I,K,,,,,,,NECGHVLYADIK,NECGHVLYADIKMEN,, +,,sp|O75369|FLNB_HUMAN,,,,,D,G,T,Y,A,V,T,Y,I,P,D,,,,DGTYAVTYIPD,HDNKDGTYAVTYIPD,, +,,sp|P57764|GSDMD_HUMAN,,S,R,G,D,N,V,Y,V,V,T,E,V,L,Q,,,,SRGDNVYVVTEVLQ,RSRGDNVYVVTEVLQ,, +,,sp|P62805|H4_HUMAN,V,T,A,M,D,V,V,Y,A,L,K,,,,,,,,VTAMDVVYALK,VTAMDVVYALKRQGR,, +,,sp|Q9NYV4|CDK12_HUMAN,R,Q,S,V,S,P,P,Y,K,E,P,S,A,Y,Q,,,,RQSVSPPYKEPSAYQ,RQSVSPPYKEPSAYQ,, +,,sp|P60842|IF4A1_HUMAN,,G,F,K,D,Q,I,Y,D,I,F,Q,K,,,,,,GFKDQIYDIFQK,RGFKDQIYDIFQKLN,, +,,sp|Q9BTM1|H2AJ_HUMAN; sp|Q99878|H2A1J_HUMAN; sp|Q96KK5|H2A1H_HUMAN; sp|Q6FI13|H2A2A_HUMAN; sp|Q16777|H2A2C_HUMAN; sp|P0C0S8|H2A1_HUMAN; sp|Q8IUE6|H2A2B_HUMAN,,,,,K,G,N,Y,A,E,R,,,,,,,,KGNYAER,RLLRKGNYAERVGAG,, +,,sp|P52565|GDIR1_HUMAN,,,I,D,K,T,D,Y,M,V,G,S,Y,G,P,,,,IDKTDYMVGSYGP,VKIDKTDYMVGSYGP,, +,,sp|P08865|RSSA_HUMAN,,,,S,D,G,I,Y,I,I,N,L,K,,,,,,SDGIYIINLK,KRKSDGIYIINLKRT,, +,,sp|P54727|RD23B_HUMAN,,,,,A,V,E,Y,L,L,M,G,I,P,G,,,,AVEYLLMGIPG,NPDRAVEYLLMGIPG,, +,,sp|Q02543|RL18A_HUMAN,,S,S,G,E,I,V,Y,C,G,Q,V,F,E,K,,,,SSGEIVYCGQVFEK,KSSGEIVYCGQVFEK,, +,,sp|O43390|HNRPR_HUMAN,,,,,L,K,D,Y,A,F,V,H,F,E,D,,,,LKDYAFVHFED,RVKKLKDYAFVHFED,, +,,sp|P12956|XRCC6_HUMAN,,,,,,N,I,Y,V,L,Q,E,L,D,N,,,,NIYVLQELDN,SVNFKNIYVLQELDN,, +,,sp|Q16881|TRXR1_HUMAN,,,,,S,Y,D,Y,D,L,I,I,I,G,G,,,,SYDYDLIIIGG,DLPKSYDYDLIIIGG,, +,,sp|O43390|HNRPR_HUMAN,,,,,S,T,A,Y,E,D,Y,Y,Y,H,P,,,,STAYEDYYYHP,QASRSTAYEDYYYHP,, +,,sp|P84090|ERH_HUMAN,,,,,,,I,Y,V,L,L,R,,,,,,,IYVLLR,DWIKEKIYVLLRRQA,, +,,sp|O76094|SRP72_HUMAN,,,,,,E,L,Y,G,Q,V,L,Y,R,,,,,ELYGQVLYR,TDKLKELYGQVLYRL,, +,,sp|P62899|RL31_HUMAN,,L,Y,T,L,V,T,Y,V,P,V,T,T,F,K,,,,LYTLVTYVPVTTFK,KLYTLVTYVPVTTFK,, +,,sp|Q16778|H2B2E_HUMAN; sp|P33778|H2B1B_HUMAN; sp|P23527|H2B1O_HUMAN; sp|P06899|H2B1J_HUMAN; sp|Q8N257|H2B3B_HUMAN; sp|Q6DRA6|H2B2D_HUMAN; sp|Q6DN03|H2B2C_HUMAN,,K,E,S,Y,S,I,Y,V,Y,K,,,,,,,,KESYSIYVYK,RKESYSIYVYKVLKQ,RKESYSIYVYKVLKR, +,,sp|O14979|HNRDL_HUMAN,,,,D,L,T,E,Y,L,S,R,,,,,,,,DLTEYLSR,SKKDLTEYLSRFGEV,, +,,sp|P09211|GSTP1_HUMAN; sp|GSTP1_HUMAN,,,,,,,P,Y,T,V,V,Y,F,P,V,,,,PYTVVYFPV,MPPYTVVYFPV,PPYTVVYFPV, +,,sp|Q13263|TIF1B_HUMAN,P,G,S,T,T,E,D,Y,N,L,I,V,I,E,R,,,,PGSTTEDYNLIVIER,PGSTTEDYNLIVIER,, +,,sp|P11021|BIP_HUMAN,,,,K,T,K,P,Y,I,Q,V,D,I,G,G,,,,KTKPYIQVDIGG,VEKKTKPYIQVDIGG,, +,,sp|P49321|NASP_HUMAN,,,,E,A,Q,L,Y,A,A,Q,A,H,L,K,,,,EAQLYAAQAHLK,ETKEAQLYAAQAHLK,, +,,sp|P19105|ML12A_HUMAN; sp|O14950|ML12B_HUMAN,,,,G,N,F,N,Y,I,E,F,T,R,,,,,,GNFNYIEFTR,DKKGNFNYIEFTRIL,, +,,sp|Q8TDN6|BRX1_HUMAN,,,K,K,Q,D,L,Y,M,W,L,S,N,S,P,,,,KKQDLYMWLSNSP,AKKKQDLYMWLSNSP,, +,,sp|P07900|HS90A_HUMAN,,,,,,H,I,Y,Y,I,T,G,E,T,K,,,,HIYYITGETK,KENQKHIYYITGETK,, +,,sp|Q9UNX3|RL26L_HUMAN; sp|P61254|RL26_HUMAN,,,,,Y,V,I,Y,I,E,R,,,,,,,,YVIYIER,YRKKYVIYIERVQRE,, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,,,,G,Y,S,F,T,T,T,A,E,,,,GYSFTTTAE,KILTERGYSFTTTAE,, +,,sp|P62805|H4_HUMAN,V,T,A,M,D,V,V,Y,A,L,K,R,,,,,,,VTAMDVVYALKR,VTAMDVVYALKRQGR,, +,,sp|P19338|NUCL_HUMAN,,,,,,,G,Y,A,F,I,E,F,A,S,,,,GYAFIEFAS,QNGKSKGYAFIEFAS,, +,,sp|P68363|TBA1B_HUMAN; sp|Q71U36|TBA1A_HUMAN; sp|Q9BQE3|TBA1C_HUMAN,,,,,,G,H,Y,T,I,G,K,,,,,,,GHYTIGK,NNYARGHYTIGKEII,, +,,sp|P49327|FAS_HUMAN,,,,S,T,A,Y,Y,A,L,V,V,R,,,,,,STAYYALVVR,VVYSTAYYALVVRGR,, +,,sp|O95602|RPA1_HUMAN,,,,,,E,H,Y,M,E,L,V,Y,R,,,,,EHYMELVYR,CFFTREHYMELVYRG,, +,,sp|Q16629|SRSF7_HUMAN,,,,,,,,Y,F,Q,S,P,S,R,,,,,YFQSPSR,GSIKGSRYFQSPSRS,, +,,sp|P07195|LDHB_HUMAN,,M,V,V,E,S,A,Y,E,V,I,K,,,,,,,MVVESAYEVIK,KMVVESAYEVIKLKG,, +,,sp|O60506|HNRPQ_HUMAN,,,,,,,G,Y,A,F,V,T,F,C,T,,,,GYAFVTFCT,LTGLNRGYAFVTFCT,, +,,sp|Q9UGN4|CLM8_HUMAN,,,,E,E,L,H,Y,A,S,V,V,F,D,S,,,,EELHYASVVFDS,SPREELHYASVVFDS,, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,,,D,L,Y,A,N,T,V,L,S,G,,,,DLYANTVLSG,VDIRKDLYANTVLSG,, +,,sp|P50395|GDIB_HUMAN,,,,K,S,D,I,Y,V,C,M,I,S,F,A,,,,KSDIYVCMISFA,VNRKSDIYVCMISFA,, +,,sp|Q07666|KHDR1_HUMAN,,K,D,D,E,E,N,Y,L,D,L,F,S,H,K,,,,KDDEENYLDLFSHK,KKDDEENYLDLFSHK,, +,,sp|P55060|XPO2_HUMAN,,H,K,D,A,A,I,Y,L,V,T,S,L,A,S,,,,HKDAAIYLVTSLAS,KHKDAAIYLVTSLAS,, +,,sp|P08865|RSSA_HUMAN,,,,S,D,G,I,Y,I,I,N,L,K,R,,,,,SDGIYIINLKR,KRKSDGIYIINLKRT,, +,,sp|P13796|PLSL_HUMAN,,,,,,,,Y,A,F,V,N,W,I,N,,,,YAFVNWIN,SYSEEEKYAFVNWIN,, +,,sp|Q92598|HS105_HUMAN,,E,K,E,N,L,S,Y,D,L,V,P,L,K,,,,,EKENLSYDLVPLK,KEKENLSYDLVPLKN,, +,,sp|P05141|ADT2_HUMAN,,A,A,Y,F,G,I,Y,D,T,A,K,,,,,,,AAYFGIYDTAK,RAAYFGIYDTAKGML,, +,,sp|Q9UM73|ALK_HUMAN,M,E,L,Q,S,P,E,Y,K,L,S,K,,,,,,,MELQSPEYKLSK,MELQSPEYKLSKLRT,, +,,sp|Q16531|DDB1_HUMAN,,,,,G,A,V,Y,S,M,V,E,F,N,G,,,,GAVYSMVEFNG,KEVKGAVYSMVEFNG,, +,,sp|P26599|PTBP1_HUMAN,S,L,D,G,Q,N,I,Y,N,A,C,C,T,L,R,,,,SLDGQNIYNACCTLR,SLDGQNIYNACCTLR,, +,,sp|P68363|TBA1B_HUMAN; sp|Q71U36|TBA1A_HUMAN; sp|Q9BQE3|TBA1C_HUMAN,,,A,F,V,H,W,Y,V,G,E,G,M,E,E,,,,AFVHWYVGEGMEE,KRAFVHWYVGEGMEE,, +,,sp|Q9HC35|EMAL4_HUMAN,I,I,N,Q,E,G,E,Y,I,K,,,,,,,,,IINQEGEYIK,IINQEGEYIKMFMRG,, +,,sp|Q5R372|RBG1L_HUMAN,T,N,A,G,D,A,I,Y,E,V,V,S,L,Q,R,,,,TNAGDAIYEVVSLQR,TNAGDAIYEVVSLQR,, +,,sp|Q02880|TOP2B_HUMAN,,H,F,D,G,E,D,Y,T,C,I,T,F,Q,P,,,,HFDGEDYTCITFQP,KHFDGEDYTCITFQP,, +,,sp|P68104|EF1A1_HUMAN; sp|Q5VTE0|EF1A3_HUMAN,,,,,,,,Y,Y,V,T,I,I,D,A,,,,YYVTIIDA,WKFETSKYYVTIIDA,, +,,sp|P14625|ENPL_HUMAN,,,E,E,A,S,D,Y,L,E,L,D,T,I,K,,,,EEASDYLELDTIK,LKEEASDYLELDTIK,, +,,sp|Q9UKM9|RALY_HUMAN,,,,,,,G,Y,A,F,V,Q,Y,S,N,,,,GYAFVQYSN,GCSVHKGYAFVQYSN,, +,,sp|P08238|HS90B_HUMAN,,,,,,,F,Y,E,A,F,S,K,,,,,,FYEAFSK,KENYKKFYEAFSKNL,, +,,sp|P62750|RL23A_HUMAN,,,,,L,D,H,Y,A,I,I,K,,,,,,,LDHYAIIK,RRNKLDHYAIIKFPL,, +,,sp|Q96PK6|RBM14_HUMAN,A,G,Q,P,S,A,A,Y,L,S,M,S,Q,G,A,,,,AGQPSAAYLSMSQGA,AGQPSAAYLSMSQGA,, +,,sp|P39656|OST48_HUMAN,,,,L,P,D,V,Y,G,V,F,Q,F,K,,,,,LPDVYGVFQFK,QFKLPDVYGVFQFKV,, +,,sp|P08238|HS90B_HUMAN,D,D,I,T,Q,E,E,Y,G,E,F,Y,K,,,,,,DDITQEEYGEFYK,DDITQEEYGEFYKSL,, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,,,L,C,Y,V,A,L,D,F,E,Q,,,,LCYVALDFEQ,DIKEKLCYVALDFEQ,, +,,sp|P11940|PABP1_HUMAN,,,,,,,G,Y,G,F,V,H,F,E,T,,,,GYGFVHFET,DENGSKGYGFVHFET,, +,,sp|P54136|SYRC_HUMAN,,,,,,,A,Y,Q,C,V,V,L,L,Q,,,,AYQCVVLLQ,EEFKKRAYQCVVLLQ,, +,,sp|Q14240|IF4A2_HUMAN,,,,,D,Q,I,Y,E,I,F,Q,K,,,,,,DQIYEIFQK,RGFKDQIYEIFQKLN,, +,,sp|P62917|RL8_HUMAN,,,,A,S,G,N,Y,A,T,V,I,S,H,N,,,,ASGNYATVISHN,LARASGNYATVISHN,, +,,sp|P34932|HSP74_HUMAN,,,,S,N,L,A,Y,D,I,V,Q,L,P,T,,,,SNLAYDIVQLPT,AEKSNLAYDIVQLPT,, +,,sp|P06733|ENOA_HUMAN,S,G,A,S,T,G,I,Y,E,A,L,E,L,R,D,,,,SGASTGIYEALELRD,SGASTGIYEALELRD,, +,,sp|P50395|GDIB_HUMAN,,,,,S,D,I,Y,V,C,M,I,S,F,A,,,,SDIYVCMISFA,VNRKSDIYVCMISFA,, +,,sp|P13639|EF2_HUMAN,,,,,,C,L,Y,A,S,V,L,T,A,Q,,,,CLYASVLTAQ,PTARRCLYASVLTAQ,, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,V,T,H,T,V,P,I,Y,E,G,Y,A,L,P,H,,,,VTHTVPIYEGYALPH,VTHTVPIYEGYALPH,, +,,sp|P26196|DDX6_HUMAN,,,G,V,T,Q,Y,Y,A,Y,V,T,E,R,,,,,GVTQYYAYVTER,LKGVTQYYAYVTERQ,, +,,sp|P11586|C1TC_HUMAN,,,D,D,S,N,L,Y,I,N,V,K,,,,,,,DDSNLYINVK,NRDDSNLYINVKLKA,, +,,sp|Q9UM73|ALK_HUMAN,H,G,A,F,G,E,V,Y,E,G,Q,V,S,G,M,,,,HGAFGEVYEGQVSGM,HGAFGEVYEGQVSGM,, +,,sp|P22234|PUR6_HUMAN,,,,T,K,E,V,Y,E,L,L,D,S,P,G,,,,TKEVYELLDSPG,EGKTKEVYELLDSPG,, +,,sp|P68104|EF1A1_HUMAN; sp|Q5VTE0|EF1A3_HUMAN,,E,H,A,L,L,A,Y,T,L,G,V,K,,,,,,EHALLAYTLGVK,REHALLAYTLGVKQL,, +,,sp|P23528|COF1_HUMAN,Y,A,L,Y,D,A,T,Y,E,T,K,,,,,,,,YALYDATYETK,YALYDATYETKESKK,, +,,sp|O75368|SH3L1_HUMAN,,,E,N,N,A,V,Y,A,F,L,G,L,T,A,,,,ENNAVYAFLGLTA,ARENNAVYAFLGLTA,, +,,sp|Q02880|TOP2B_HUMAN,K,H,F,D,G,E,D,Y,T,C,I,T,F,Q,P,,,,KHFDGEDYTCITFQP,KHFDGEDYTCITFQP,, +,,sp|P68104|EF1A1_HUMAN; sp|Q5VTE0|EF1A3_HUMAN,,,,,,,Y,Y,V,T,I,I,D,A,P,,,,YYVTIIDAP,KFETSKYYVTIIDAP,, +,,sp|P09211|GSTP1_HUMAN,,,,,M,P,P,Y,T,V,V,Y,F,P,V,,,,MPPYTVVYFPV,MPPYTVVYFPV,, +,,sp|Q9BUQ8|DDX23_HUMAN,E,E,S,D,Q,G,P,Y,A,I,I,L,A,P,T,,,,EESDQGPYAIILAPT,EESDQGPYAIILAPT,, +,,sp|P61158|ARP3_HUMAN,,,,,,K,D,Y,E,E,I,G,P,S,I,,,,KDYEEIGPSI,VCHTKKDYEEIGPSI,, +,,sp|P63173|RL38_HUMAN,,,,,,,,Y,L,Y,T,L,V,I,T,,,,YLYTLVIT,FKVRCSRYLYTLVIT,, +,,sp|Q92544|TM9S4_HUMAN,,,,T,Q,L,P,Y,E,Y,Y,S,L,P,F,,,,TQLPYEYYSLPF,SSRTQLPYEYYSLPF,, +,,sp|P26599|PTBP1_HUMAN,,,,G,Q,P,I,Y,I,Q,F,S,N,H,K,,,,GQPIYIQFSNHK,VLRGQPIYIQFSNHK,, +,,sp|P07900|HS90A_HUMAN,D,D,I,T,N,E,E,Y,G,E,F,Y,K,,,,,,DDITNEEYGEFYK,DDITNEEYGEFYKSL,, +,,sp|P52565|GDIR1_HUMAN,,,,,A,E,E,Y,E,F,L,T,P,V,E,,,,AEEYEFLTPVE,YGPRAEEYEFLTPVE,, +,,sp|P55884|EIF3B_HUMAN,,,,,N,G,D,Y,L,C,V,K,,,,,,,NGDYLCVK,HWQKNGDYLCVKVDR,, +,,sp|P63010|AP2B1_HUMAN,,,,Q,G,H,I,Y,M,E,M,N,F,T,N,,,,QGHIYMEMNFTN,THRQGHIYMEMNFTN,, +,,sp|P68363|TBA1B_HUMAN; sp|Q71U36|TBA1A_HUMAN; sp|Q9BQE3|TBA1C_HUMAN,,E,D,A,A,N,N,Y,A,R,,,,,,,,,EDAANNYAR,KEDAANNYARGHYTI,, +,,sp|Q01130|SRSF2_HUMAN,,,,V,G,D,V,Y,I,P,R,,,,,,,,VGDVYIPR,YGRVGDVYIPRDRYT,, +,,sp|Q9H8H2|DDX31_HUMAN,,,,S,D,G,P,Y,A,L,V,L,V,P,T,,,,SDGPYALVLVPT,IQRSDGPYALVLVPT,, +,,sp|P62826|RAN_HUMAN,,,,N,L,Q,Y,Y,D,I,S,A,K,,,,,,NLQYYDISAK,RKKNLQYYDISAKSN,, +,,sp|O75306|NDUS2_HUMAN,,T,Q,P,Y,D,V,Y,D,Q,V,E,F,D,V,,,,TQPYDVYDQVEFDV,KTQPYDVYDQVEFDV,, +,,sp|Q9Y617|SERC_HUMAN,I,D,N,S,Q,G,F,Y,V,C,P,V,E,P,Q,,,,IDNSQGFYVCPVEPQ,IDNSQGFYVCPVEPQ,, +,,sp|O60506|HNRPQ_HUMAN,,,,,L,K,D,Y,A,F,I,H,F,D,E,,,,LKDYAFIHFDE,RVKKLKDYAFIHFDE,, +,,sp|P23921|RIR1_HUMAN,,,I,I,D,I,N,Y,Y,P,V,P,E,A,C,,,,IIDINYYPVPEAC,NKIIDINYYPVPEAC,, +,,sp|P02786|TFR1_HUMAN,G,F,V,E,P,D,H,Y,V,V,V,G,A,Q,R,,,,GFVEPDHYVVVGAQR,GFVEPDHYVVVGAQR,, +,,sp|P11021|BIP_HUMAN,,I,E,I,E,S,F,Y,E,G,E,D,F,S,E,,,,IEIESFYEGEDFSE,RIEIESFYEGEDFSE,, +,,sp|P33992|MCM5_HUMAN,L,A,A,L,P,N,V,Y,E,V,I,S,K,,,,,,LAALPNVYEVISK,LAALPNVYEVISKSI,, +,,sp|P10253|LYAG_HUMAN,,,,,,G,A,Y,T,Q,V,I,F,L,A,,,,GAYTQVIFLA,EVLERGAYTQVIFLA,, +,,sp|P27824|CALX_HUMAN,,,,,T,G,I,Y,E,E,K,,,,,,,,TGIYEEK,KNPKTGIYEEKHAKR,, +,,sp|O60506|HNRPQ_HUMAN,,,,,,,D,Y,A,F,I,H,F,D,E,,,,DYAFIHFDE,RVKKLKDYAFIHFDE,, +,,sp|Q9UHA4|LTOR3_HUMAN,I,I,C,Y,Y,N,T,Y,Q,V,V,Q,F,N,R,,,,IICYYNTYQVVQFNR,IICYYNTYQVVQFNR,, +,,sp|P23528|COF1_HUMAN,,,,,,M,I,Y,A,S,S,K,,,,,,,MIYASSK,PLKSKMIYASSKDAI,, +,,sp|P06744|G6PI_HUMAN,T,N,G,Q,H,A,F,Y,Q,L,I,H,Q,G,T,,,,TNGQHAFYQLIHQGT,TNGQHAFYQLIHQGT,, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,,,Q,E,Y,D,E,S,G,P,S,I,,,,QEYDESGPSI,MWISKQEYDESGPSI,, +,,sp|P25705|ATPA_HUMAN,,,H,A,L,I,I,Y,D,D,L,S,K,,,,,,HALIIYDDLSK,GKHALIIYDDLSKQA,, +,,sp|Q14204|DYHC1_HUMAN,P,N,Y,I,V,P,D,Y,M,P,V,V,Y,D,K,,,,PNYIVPDYMPVVYDK,PNYIVPDYMPVVYDK,, +,,sp|Q9BY32|ITPA_HUMAN,,,,,,S,A,Y,A,L,C,T,F,A,L,,,,SAYALCTFAL,GFEDKSAYALCTFAL,, +,,sp|Q9NR30|DDX21_HUMAN,,,,,,E,E,Y,Q,L,V,Q,V,E,Q,,,,EEYQLVQVEQ,FYQHKEEYQLVQVEQ,, +,,sp|Q13200|PSMD2_HUMAN,,,,L,K,E,I,Y,E,N,M,A,P,G,E,,,,LKEIYENMAPGE,YGKLKEIYENMAPGE,, +,,sp|Q96JH7|VCIP1_HUMAN,,,,S,S,G,D,Y,S,A,T,F,L,P,G,,,,SSGDYSATFLPG,GMRSSGDYSATFLPG,, +,,sp|P34932|HSP74_HUMAN,N,A,V,E,E,Y,V,Y,E,M,R,,,,,,,,NAVEEYVYEMR,NAVEEYVYEMRDKLS,, +,,sp|Q9NWQ8|PHAG1_HUMAN,P,S,S,C,N,D,L,Y,A,T,V,K,,,,,,,PSSCNDLYATVK,PSSCNDLYATVKDFE,, +,,sp|Q9H299|SH3L3_HUMAN,,,,,,I,Q,Y,Q,L,V,D,I,S,Q,,,,IQYQLVDISQ,LDGKRIQYQLVDISQ,, +,,sp|Q01780|EXOSX_HUMAN,,,,D,D,T,H,Y,L,L,Y,I,Y,D,K,,,,DDTHYLLYIYDK,YARDDTHYLLYIYDK,, +,,sp|P08238|HS90B_HUMAN,,,,,,S,I,Y,Y,I,T,G,E,S,K,,,,SIYYITGESK,KETQKSIYYITGESK,, +,,sp|Q08211|DHX9_HUMAN,,,,D,F,V,N,Y,L,V,R,,,,,,,,DFVNYLVR,AARDFVNYLVRINEI,, +,,sp|O43242|PSMD3_HUMAN,,F,Q,A,D,G,T,Y,T,L,I,I,R,,,,,,FQADGTYTLIIR,KFQADGTYTLIIRLR,, +,,sp|P35268|RL22_HUMAN,,,,,,E,S,Y,E,L,R,,,,,,,,ESYELR,VANSKESYELRYFQI,, +,,sp|P07900|HS90A_HUMAN,,,,,,,F,Y,E,Q,F,S,K,,,,,,FYEQFSK,KENYKKFYEQFSKNI,, +,,sp|Q16778|H2B2E_HUMAN; sp|P33778|H2B1B_HUMAN; sp|P23527|H2B1O_HUMAN; sp|P06899|H2B1J_HUMAN; sp|Q8N257|H2B3B_HUMAN; sp|Q6DRA6|H2B2D_HUMAN; sp|Q6DN03|H2B2C_HUMAN,,,E,S,Y,S,I,Y,V,Y,K,,,,,,,,ESYSIYVYK,RKESYSIYVYKVLKQ,RKESYSIYVYKVLKR, +,,sp|Q9BWF3|RBM4_HUMAN; sp|Q9BQ04|RBM4B_HUMAN,,,,,,,N,Y,G,F,V,H,I,E,D,,,,NYGFVHIED,ECDIIKNYGFVHIED,, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,T,V,P,I,Y,E,G,Y,A,L,P,H,,,,,,,TVPIYEGYALPH,TVPIYEGYALPHAIL,, +,,sp|P42167|LAP2B_HUMAN; sp|P42166|LAP2A_HUMAN,,,,,,D,V,Y,V,Q,L,Y,L,Q,H,,,,DVYVQLYLQH,GEQRKDVYVQLYLQH,, +,,sp|Q14839|CHD4_HUMAN,,,,,,,A,Y,H,M,V,C,L,D,P,,,,AYHMVCLDP,CDTCPRAYHMVCLDP,, +,,sp|P24752|THIL_HUMAN,,,N,E,Q,D,A,Y,A,I,N,S,Y,T,R,,,,NEQDAYAINSYTR,ARNEQDAYAINSYTR,, +,,sp|P62750|RL23A_HUMAN,,,,L,A,P,D,Y,D,A,L,D,V,A,N,,,,LAPDYDALDVAN,YVRLAPDYDALDVAN,, +,,sp|Q969V3|NCLN_HUMAN,,,,T,H,A,A,Y,N,L,L,F,F,A,S,,,,THAAYNLLFFAS,YKRTHAAYNLLFFAS,, +,,sp|Q5JPE7|NOMO2_HUMAN; sp|Q15155|NOMO1_HUMAN; sp|P69849|NOMO3_HUMAN,,S,D,V,E,I,N,Y,S,L,I,E,I,K,,,,,SDVEINYSLIEIK,KSDVEINYSLIEIKL,, +,,sp|P06733|ENOA_HUMAN,S,G,A,S,T,G,I,Y,E,A,L,E,L,R,,,,,SGASTGIYEALELR,SGASTGIYEALELRD,, +,,sp|P63173|RL38_HUMAN,,,,,,Y,L,Y,T,L,V,I,T,D,K,,,,YLYTLVITDK,VRCSRYLYTLVITDK,, +,,sp|P23921|RIR1_HUMAN,D,D,S,I,E,G,I,Y,D,T,L,K,,,,,,,DDSIEGIYDTLK,DDSIEGIYDTLKQCA,, +,,sp|Q9Y5S9|RBM8A_HUMAN,,,,,,,G,Y,T,L,V,E,Y,E,T,,,,GYTLVEYET,RTGYLKGYTLVEYET,, +,,sp|Q15648|MED1_HUMAN,S,H,S,K,S,P,A,Y,T,P,Q,N,L,D,S,,,,SHSKSPAYTPQNLDS,SHSKSPAYTPQNLDS,, +,,sp|P78406|RAE1L_HUMAN,,,,,A,P,N,Y,S,C,V,M,T,G,S,,,,APNYSCVMTGS,HWIKAPNYSCVMTGS,, +,,sp|P78527|PRKDC_HUMAN,,,H,D,V,G,A,Y,M,L,M,Y,K,,,,,,HDVGAYMLMYK,GKHDVGAYMLMYKGA,, +,,sp|P09429|HMGB1_HUMAN; sp|P26583|HMGB2_HUMAN,,,,,M,S,S,Y,A,F,F,V,Q,T,C,,,,MSSYAFFVQTC,PRGKMSSYAFFVQTC,, +,,sp|P06733|ENOA_HUMAN,,,I,G,A,E,V,Y,H,N,L,K,,,,,,,IGAEVYHNLK,MRIGAEVYHNLKNVI,, +,,sp|P11021|BIP_HUMAN,,,,,T,K,P,Y,I,Q,V,D,I,G,G,,,,TKPYIQVDIGG,VEKKTKPYIQVDIGG,, +,,sp|Q16881|TRXR1_HUMAN,,,,,,,S,Y,D,Y,D,L,I,I,I,,,,SYDYDLIII,PEDLPKSYDYDLIII,, +,,sp|Q9UKV8|AGO2_HUMAN,,,,,,N,L,Y,T,A,M,P,L,P,I,,,,NLYTAMPLPI,FDGRKNLYTAMPLPI,, +,,sp|Q9Y2X3|NOP58_HUMAN,,,,,T,Q,L,Y,E,Y,L,Q,N,R,,,,,TQLYEYLQNR,SEYRTQLYEYLQNRM,, +,,sp|Q14152|EIF3A_HUMAN,L,Q,Q,V,S,Q,I,Y,Q,S,I,E,F,S,R,,,,LQQVSQIYQSIEFSR,LQQVSQIYQSIEFSR,, +,,sp|P00338|LDHA_HUMAN,,,,D,Q,L,I,Y,N,L,L,K,,,,,,,DQLIYNLLK,TLKDQLIYNLLKEEQ,, +,,sp|Q9UIB8|SLAF5_HUMAN,E,E,P,V,N,T,V,Y,S,E,V,Q,F,A,D,,,,EEPVNTVYSEVQFAD,EEPVNTVYSEVQFAD,, +,,sp|Q14697|GANAB_HUMAN,H,H,G,P,Q,T,L,Y,L,P,V,T,L,S,S,,,,HHGPQTLYLPVTLSS,HHGPQTLYLPVTLSS,, +,,sp|P78347|GTF2I_HUMAN,,,K,T,V,E,D,Y,F,C,F,C,Y,G,K,,,,KTVEDYFCFCYGK,LRKTVEDYFCFCYGK,, +,,sp|P31483|TIA1_HUMAN,,,,,,,G,Y,G,F,V,S,F,F,N,,,,GYGFVSFFN,ATGKSKGYGFVSFFN,, +,,sp|O75503|CLN5_HUMAN,,,,,,I,T,Y,E,E,I,P,L,P,I,,,,ITYEEIPLPI,FPFIKITYEEIPLPI,, +,,sp|P19338|NUCL_HUMAN,,,,,G,I,A,Y,I,E,F,K,,,,,,,GIAYIEFK,GKSKGIAYIEFKTEA,, +,,sp|P61604|CH10_HUMAN,V,V,L,D,D,K,D,Y,F,L,F,R,,,,,,,VVLDDKDYFLFR,VVLDDKDYFLFRDGD,, +,,sp|P23921|RIR1_HUMAN,,I,I,D,I,N,Y,Y,P,V,P,E,A,C,L,,,,IIDINYYPVPEACL,KIIDINYYPVPEACL,, +,,sp|P47756|CAPZB_HUMAN,,,,,,,D,Y,L,L,C,D,Y,N,R,,,,DYLLCDYNR,DKVVGKDYLLCDYNR,, +,,sp|Q9Y617|SERC_HUMAN,,,,S,Q,T,I,Y,E,I,I,D,N,S,Q,,,,SQTIYEIIDNSQ,SIKSQTIYEIIDNSQ,, +,,sp|P23528|COF1_HUMAN,H,E,L,Q,A,N,C,Y,E,E,V,K,D,R,,,,,HELQANCYEEVKDR,HELQANCYEEVKDRC,, +,,sp|Q13347|EIF3I_HUMAN,S,A,A,L,S,P,N,Y,D,H,V,V,L,G,G,,,,SAALSPNYDHVVLGG,SAALSPNYDHVVLGG,, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,D,L,T,D,Y,L,M,K,,,,,,,,DLTDYLMK,AGRDLTDYLMKILTE,, +,,sp|P62273|RS29_HUMAN,,,G,H,Q,Q,L,Y,W,S,H,P,R,,,,,,GHQQLYWSHPR,MGHQQLYWSHPRKF,, +,,sp|P00338|LDHA_HUMAN,,Q,V,V,E,S,A,Y,E,V,I,K,,,,,,,QVVESAYEVIK,KQVVESAYEVIKLKG,, +,,sp|P53396|ACLY_HUMAN,,,T,T,D,G,V,Y,E,G,V,A,I,G,G,,,,TTDGVYEGVAIGG,SRTTDGVYEGVAIGG,, +,,sp|P63010|AP2B1_HUMAN,,,,,D,S,D,Y,Y,N,M,L,L,K,,,,,DSDYYNMLLK,LLPKDSDYYNMLLKK,, +,,sp|P09211|GSTP1_HUMAN; sp|GSTP1_HUMAN,A,F,L,A,S,P,E,Y,V,N,L,P,I,N,G,,,,AFLASPEYVNLPING,AFLASPEYVNLPING,, +,,sp|P17844|DDX5_HUMAN,,,,T,G,T,A,Y,T,F,F,T,P,N,N,,,,TGTAYTFFTPNN,STKTGTAYTFFTPNN,, +,,sp|Q9NQ50|RM40_HUMAN,,,,,,,V,Y,T,Q,V,E,F,K,,,,,VYTQVEFK,YNDITKVYTQVEFKR,, +,,sp|P62269|RS18_HUMAN,,,,,,,,Y,A,H,V,V,L,R,,,,,YAHVVLR,IKGVGRRYAHVVLRK,, +,,sp|Q68CZ2|TENS3_HUMAN,,,,H,G,D,N,Y,L,V,L,N,L,S,E,,,,HGDNYLVLNLSE,KSKHGDNYLVLNLSE,, +,,sp|P61158|ARP3_HUMAN,,A,E,P,E,D,H,Y,F,L,L,T,E,P,P,,,,AEPEDHYFLLTEPP,RAEPEDHYFLLTEPP,, +,,sp|P62249|RS16_HUMAN,G,G,H,V,A,Q,I,Y,A,I,R,,,,,,,,GGHVAQIYAIR,GGHVAQIYAIRQSIS,, +,,sp|P58876|H2B1D_HUMAN; sp|Q99879|H2B1M_HUMAN; sp|Q99880|H2B1L_HUMAN; sp|Q99877|H2B1N_HUMAN; sp|Q93079|H2B1H_HUMAN; sp|Q5QNW6|H2B2F_HUMAN; sp|P62807|H2B1C_HUMAN; sp|O60814|H2B1K_HUMAN; sp|P57053|H2BFS_HUMAN,,,,,K,E,S,Y,S,V,Y,V,Y,K,,,,,KESYSVYVYK,KRSRKESYSVYVYKV,, +,,sp|P09211|GSTP1_HUMAN; sp|GSTP1_HUMAN,,P,P,Y,T,V,V,Y,F,P,V,R,,,,,,,PPYTVVYFPVR,MPPYTVVYFPVRGRC,PPYTVVYFPVRGRC, +,,sp|O75306|NDUS2_HUMAN,,,,,T,Q,P,Y,D,V,Y,D,Q,V,E,,,,TQPYDVYDQVE,DLRKTQPYDVYDQVE,, +,,sp|Q2M2I8|AAK1_HUMAN,,,,,,G,H,Y,V,L,C,D,F,G,S,,,,GHYVLCDFGS,LLHDRGHYVLCDFGS,, +,,sp|P62847|RS24_HUMAN,T,T,G,F,G,M,I,Y,D,S,L,D,Y,A,K,,,,TTGFGMIYDSLDYAK,TTGFGMIYDSLDYAK,, +,,sp|Q14240|IF4A2_HUMAN,,G,F,K,D,Q,I,Y,E,I,F,Q,K,,,,,,GFKDQIYEIFQK,RGFKDQIYEIFQKLN,, +,,sp|O43390|HNRPR_HUMAN,,S,T,A,Y,E,D,Y,Y,Y,H,P,P,P,R,,,,STAYEDYYYHPPPR,RSTAYEDYYYHPPPR,, +,,sp|P14618|KPYM_HUMAN,,E,A,E,A,A,I,Y,H,L,Q,L,F,E,E,,,,EAEAAIYHLQLFEE,REAEAAIYHLQLFEE,, +,,sp|P25789|PSA4_HUMAN,Q,S,D,P,S,G,N,Y,G,G,W,K,,,,,,,QSDPSGNYGGWK,QSDPSGNYGGWKATC,, +,,sp|P09211|GSTP1_HUMAN; sp|GSTP1_HUMAN,,,,,,P,P,Y,T,V,V,Y,F,P,V,,,,PPYTVVYFPV,MPPYTVVYFPV,PPYTVVYFPV, +,,sp|O43390|HNRPR_HUMAN,,,,,,,G,Y,A,F,I,T,F,C,G,,,,GYAFITFCG,LSGQNRGYAFITFCG,, +,,sp|Q92835|SHIP1_HUMAN,,,,,N,Q,N,Y,M,N,I,L,R,,,,,,NQNYMNILR,KLRRNQNYMNILRFL,, +,,sp|P60174|TPIS_HUMAN,,,,V,V,L,A,Y,E,P,V,W,A,I,G,,,,VVLAYEPVWAIG,WSKVVLAYEPVWAIG,, +,,sp|Q9UKK9|NUDT5_HUMAN,,,,,T,L,H,Y,E,C,I,V,L,V,K,,,,TLHYECIVLVK,VLQRTLHYECIVLVK,, +,,sp|Q9Y277|VDAC3_HUMAN,,,,,V,C,N,Y,G,L,T,F,T,Q,K,,,,VCNYGLTFTQK,TKYKVCNYGLTFTQK,, +,,sp|P50395|GDIB_HUMAN,D,Y,L,D,Q,P,C,Y,E,T,I,N,R,,,,,,DYLDQPCYETINR,DYLDQPCYETINRIK,, +,,sp|P62805|H4_HUMAN,,,,D,A,V,T,Y,T,E,H,A,K,,,,,,DAVTYTEHAK,VIRDAVTYTEHAKRK,, +,,sp|P60842|IF4A1_HUMAN; sp|Q14240|IF4A2_HUMAN; sp|P38919|IF4A3_HUMAN,,,,,,G,I,Y,A,Y,G,F,E,K,P,,,,GIYAYGFEKP,ESLLRGIYAYGFEKP,EDLLRGIYAYGFEKP, +,,sp|Q9Y490|TLN1_HUMAN,G,I,T,N,H,D,E,Y,S,L,V,R,,,,,,,GITNHDEYSLVR,GITNHDEYSLVRELM,, +,,sp|P0DP24|CALM2_HUMAN,F,D,K,D,G,N,G,Y,I,S,A,A,E,L,R,,,,FDKDGNGYISAAELR,FDKDGNGYISAAELR,, +,,sp|P11142|HSP7C_HUMAN,G,I,D,L,G,T,T,Y,S,C,V,G,V,F,Q,,,,GIDLGTTYSCVGVFQ,GIDLGTTYSCVGVFQ,, +,,sp|E9PAV3|NACAM_HUMAN; sp|Q13765|NACA_HUMAN,,S,P,A,S,D,T,Y,I,V,F,G,E,A,K,,,,SPASDTYIVFGEAK,KSPASDTYIVFGEAK,, +,,sp|Q06830|PRDX1_HUMAN,,,T,I,A,Q,D,Y,G,V,L,K,,,,,,,TIAQDYGVLK,KRTIAQDYGVLKADE,, +,,sp|P23193|TCEA1_HUMAN,,,,,N,C,T,Y,T,Q,V,Q,T,R,,,,,NCTYTQVQTR,CKKKNCTYTQVQTRS,, +,,sp|Q99497|PARK7_HUMAN,,,,,E,G,P,Y,D,V,V,V,L,P,G,,,,EGPYDVVVLPG,DAKKEGPYDVVVLPG,, +,,sp|P21281|VATB2_HUMAN,A,D,V,S,N,Q,L,Y,A,C,Y,A,I,G,K,,,,ADVSNQLYACYAIGK,ADVSNQLYACYAIGK,, +,,sp|Q969T4|UB2E3_HUMAN; sp|P51965|UB2E1_HUMAN; sp|Q96LR5|UB2E2_HUMAN,,,,G,D,N,I,Y,E,W,R,,,,,,,,GDNIYEWR,GPKGDNIYEWRSTIL,, +,,sp|P84098|RL19_HUMAN,,,,,,H,M,Y,H,S,L,Y,L,K,,,,,HMYHSLYLK,KKIDRHMYHSLYLKV,, +,,sp|Q92544|TM9S4_HUMAN,,T,Q,L,P,Y,E,Y,Y,S,L,P,F,C,Q,,,,TQLPYEYYSLPFCQ,RTQLPYEYYSLPFCQ,, +,,sp|P11940|PABP1_HUMAN,,,,,S,L,G,Y,A,Y,V,N,F,Q,Q,,,,SLGYAYVNFQQ,ITRRSLGYAYVNFQQ,, +,,sp|Q07020|RL18_HUMAN,,,,S,Q,D,I,Y,L,R,,,,,,,,,SQDIYLR,EPKSQDIYLRLLVKL,, +,,sp|P62906|RL10A_HUMAN,,,,,D,T,L,Y,E,A,V,R,,,,,,,DTLYEAVR,KVSRDTLYEAVREVL,, +,,sp|Q9HC35|EMAL4_HUMAN,I,I,N,Q,E,G,E,Y,I,K,M,F,M,R,,,,,IINQEGEYIKMFMR,IINQEGEYIKMFMRG,, +,,sp|O00571|DDX3X_HUMAN; sp|O15523|DDX3Y_HUMAN,,,,D,K,D,A,Y,S,S,F,G,S,R,,,,,DKDAYSSFGSR,SSKDKDAYSSFGSRS,CSKDKDAYSSFGSRD, +,,sp|P08238|HS90B_HUMAN,E,M,T,S,L,S,E,Y,V,S,R,,,,,,,,EMTSLSEYVSR,EMTSLSEYVSRMKET,, +,,sp|P19338|NUCL_HUMAN,,,,S,I,S,L,Y,Y,T,G,E,K,,,,,,SISLYYTGEK,DGRSISLYYTGEKGQ,, +,,sp|P78527|PRKDC_HUMAN,,,,,,,F,Y,Q,G,F,L,F,S,E,,,,FYQGFLFSE,VFNELKFYQGFLFSE,, +,,sp|O60841|IF2P_HUMAN,,,T,S,E,V,P,Y,A,G,I,N,I,G,P,,,,TSEVPYAGINIGP,LKTSEVPYAGINIGP,, +,,sp|P63244|RACK1_HUMAN,,,,D,E,T,N,Y,G,I,P,Q,R,,,,,,DETNYGIPQR,LTRDETNYGIPQRAL,, +,,sp|P58876|H2B1D_HUMAN; sp|Q99879|H2B1M_HUMAN; sp|Q99880|H2B1L_HUMAN; sp|Q99877|H2B1N_HUMAN; sp|Q93079|H2B1H_HUMAN; sp|Q5QNW6|H2B2F_HUMAN; sp|P62807|H2B1C_HUMAN; sp|O60814|H2B1K_HUMAN; sp|P57053|H2BFS_HUMAN,,,E,S,Y,S,V,Y,V,Y,K,,,,,,,,ESYSVYVYK,RKESYSVYVYKVLKQ,, +,,sp|P62263|RS14_HUMAN,D,R,D,E,S,S,P,Y,A,A,M,L,A,A,Q,,,,DRDESSPYAAMLAAQ,DRDESSPYAAMLAAQ,, +,,sp|Q9NQS7|INCE_HUMAN,,,,,,,S,Y,K,Q,A,V,S,E,L,,,,SYKQAVSEL,SARRKRSYKQAVSEL,, +,,sp|Q9UQ80|PA2G4_HUMAN,,,,S,D,Q,D,Y,I,L,K,,,,,,,,SDQDYILK,PLKSDQDYILKEGDL,, +,,sp|Q99497|PARK7_HUMAN,,,,K,E,G,P,Y,D,V,V,V,L,P,G,,,,KEGPYDVVVLPG,DAKKEGPYDVVVLPG,,
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/C and D finder/test-data/input5.csv Tue May 22 18:17:33 2018 -0400 @@ -0,0 +1,36 @@ +Amino Acids,sp|Q14204|DYHC1_HUMAN,sp|P62269|RS18_HUMAN,sp|Q14258|TRI25_HUMAN,sp|E9PAV3|NACAM_HUMAN,sp|P07195|LDHB_HUMAN,sp|Q9NR30|DDX21_HUMAN,sp|P26599|PTBP1_HUMAN,sp|P78406|RAE1L_HUMAN,sp|Q9BQE3|TBA1C_HUMAN,sp|O75165|DJC13_HUMAN,sp|Q92841|DDX17_HUMAN,sp|P42167|LAP2B_HUMAN,sp|Q14566|MCM6_HUMAN,sp|P08238|HS90B_HUMAN,sp|P60174|TPIS_HUMAN,sp|P31939|PUR9_HUMAN,sp|Q8TDN6|BRX1_HUMAN,sp|P62750|RL23A_HUMAN,sp|Q96QV6|H2A1A_HUMAN,sp|P11940|PABP1_HUMAN,sp|Q9UM73|ALK_HUMAN,sp|P62807|H2B1C_HUMAN,sp|P52272|HNRPM_HUMAN,sp|P10253|LYAG_HUMAN,sp|Q9BTM1|H2AJ_HUMAN,sp|Q08211|DHX9_HUMAN,sp|P22234|PUR6_HUMAN,sp|P41250|GARS_HUMAN,sp|P57053|H2BFS_HUMAN,sp|Q92769|HDAC2_HUMAN,sp|P55884|EIF3B_HUMAN,sp|Q4VC31|CCD58_HUMAN,sp|Q969T4|UB2E3_HUMAN,sp|Q9H8H2|DDX31_HUMAN,sp|Q07020|RL18_HUMAN,sp|Q9Y6E2|BZW2_HUMAN,sp|Q9NQ50|RM40_HUMAN,sp|P07948|LYN_HUMAN,sp|P60891|PRPS1_HUMAN,sp|Q9Y3I0|RTCB_HUMAN,sp|Q93077|H2A1C_HUMAN,sp|P60842|IF4A1_HUMAN,sp|P62917|RL8_HUMAN,sp|P63010|AP2B1_HUMAN,sp|P62979|RS27A_HUMAN,sp|Q71U36|TBA1A_HUMAN,sp|P63244|RACK1_HUMAN,sp|P04040|CATA_HUMAN,sp|Q99497|PARK7_HUMAN,sp|Q16778|H2B2E_HUMAN,sp|P48444|COPD_HUMAN,sp|Q02790|FKBP4_HUMAN,sp|P42166|LAP2A_HUMAN,sp|P78527|PRKDC_HUMAN,sp|Q8NE71|ABCF1_HUMAN,sp|P54136|SYRC_HUMAN,sp|P51858|HDGF_HUMAN,sp|P22061|PIMT_HUMAN,sp|CATA_HUMAN,sp|Q14697|GANAB_HUMAN,sp|O60814|H2B1K_HUMAN,sp|GSTP1_HUMAN,sp|P62906|RL10A_HUMAN,sp|Q6FI13|H2A2A_HUMAN,sp|P18124|RL7_HUMAN,sp|P19105|ML12A_HUMAN,sp|O60841|IF2P_HUMAN,sp|Q99878|H2A1J_HUMAN,sp|P23528|COF1_HUMAN,sp|Q07666|KHDR1_HUMAN,sp|Q9Y617|SERC_HUMAN,sp|Q5JSH3|WDR44_HUMAN,sp|P60709|ACTB_HUMAN,sp|P30086|PEBP1_HUMAN,sp|Q13263|TIF1B_HUMAN,sp|Q96QK1|VPS35_HUMAN,sp|P54727|RD23B_HUMAN,sp|P38919|IF4A3_HUMAN,sp|Q13242|SRSF9_HUMAN,sp|P55060|XPO2_HUMAN,sp|Q15393|SF3B3_HUMAN,sp|Q14699|RFTN1_HUMAN,sp|P78347|GTF2I_HUMAN,sp|P39656|OST48_HUMAN,sp|P62987|RL40_HUMAN,sp|Q16881|TRXR1_HUMAN,sp|Q6DN03|H2B2C_HUMAN,sp|Q08J23|NSUN2_HUMAN,sp|Q9BWF3|RBM4_HUMAN,sp|P52597|HNRPF_HUMAN,sp|Q01780|EXOSX_HUMAN,sp|P19338|NUCL_HUMAN,sp|P49368|TCPG_HUMAN,sp|O00571|DDX3X_HUMAN,sp|O75503|CLN5_HUMAN,sp|P14618|KPYM_HUMAN,sp|Q13595|TRA2A_HUMAN,sp|P68363|TBA1B_HUMAN,sp|Q9HC35|EMAL4_HUMAN,sp|Q02880|TOP2B_HUMAN,sp|Q9UKM9|RALY_HUMAN,sp|P50395|GDIB_HUMAN,sp|O43390|HNRPR_HUMAN,sp|Q5R372|RBG1L_HUMAN,sp|P07900|HS90A_HUMAN,sp|P14625|ENPL_HUMAN,sp|P06733|ENOA_HUMAN,sp|P68104|EF1A1_HUMAN,sp|Q99880|H2B1L_HUMAN,sp|P26641|EF1G_HUMAN,sp|Q15084|PDIA6_HUMAN,sp|Q96PE3|INP4A_HUMAN,sp|Q92835|SHIP1_HUMAN,sp|Q16531|DDB1_HUMAN,sp|Q5JPE7|NOMO2_HUMAN,sp|P61604|CH10_HUMAN,sp|Q9BQ04|RBM4B_HUMAN,sp|P62995|TRA2B_HUMAN,sp|P52788|SPSY_HUMAN,sp|P58876|H2B1D_HUMAN,sp|Q9BUQ8|DDX23_HUMAN,sp|P49411|EFTU_HUMAN,sp|O76094|SRP72_HUMAN,sp|P62847|RS24_HUMAN,sp|Q13765|NACA_HUMAN,sp|Q14152|EIF3A_HUMAN,sp|Q13347|EIF3I_HUMAN,sp|P42224|STAT1_HUMAN,sp|Q9Y2X3|NOP58_HUMAN,sp|P62195|PRS8_HUMAN,sp|P53396|ACLY_HUMAN,sp|O75368|SH3L1_HUMAN,sp|Q93079|H2B1H_HUMAN,sp|Q9UHA4|LTOR3_HUMAN,sp|Q96KK5|H2A1H_HUMAN,sp|P11908|PRPS2_HUMAN,sp|P12956|XRCC6_HUMAN,sp|P11021|BIP_HUMAN,sp|P21108|PRPS3_HUMAN,sp|P63173|RL38_HUMAN,sp|P06899|H2B1J_HUMAN,sp|P67775|PP2AA_HUMAN,sp|O60506|HNRPQ_HUMAN,sp|P62714|PP2AB_HUMAN,sp|Q5QNW6|H2B2F_HUMAN,sp|Q9UKV8|AGO2_HUMAN,sp|P63261|ACTG_HUMAN,sp|O75306|NDUS2_HUMAN,sp|P57764|GSDMD_HUMAN,sp|P00491|PNPH_HUMAN,sp|P62263|RS14_HUMAN,sp|O15523|DDX3Y_HUMAN,sp|P13639|EF2_HUMAN,sp|P0CG47|UBB_HUMAN,sp|Q15155|NOMO1_HUMAN,sp|Q9UKK9|NUDT5_HUMAN,sp|P23527|H2B1O_HUMAN,sp|P04406|G3P_HUMAN,sp|P13796|PLSL_HUMAN,sp|Q9UNN5|FAF1_HUMAN,sp|Q6DRA6|H2B2D_HUMAN,sp|P62805|H4_HUMAN,sp|P24928|RPB1_HUMAN,sp|Q8N257|H2B3B_HUMAN,sp|Q9UKJ3|GPTC8_HUMAN,sp|P54105|ICLN_HUMAN,sp|P11586|C1TC_HUMAN,sp|O15144|ARPC2_HUMAN,sp|Q9H299|SH3L3_HUMAN,sp|O14950|ML12B_HUMAN,sp|P52565|GDIR1_HUMAN,sp|P61254|RL26_HUMAN,sp|P00338|LDHA_HUMAN,sp|P25705|ATPA_HUMAN,sp|P09211|GSTP1_HUMAN,sp|P0DP24|CALM2_HUMAN,sp|Q06830|PRDX1_HUMAN,sp|P62249|RS16_HUMAN,sp|Q96JH7|VCIP1_HUMAN,sp|Q9Y5S9|RBM8A_HUMAN,sp|P33778|H2B1B_HUMAN,sp|P02786|TFR1_HUMAN,sp|P0C0S8|H2A1_HUMAN,sp|Q969V3|NCLN_HUMAN,sp|P07437|TBB5_HUMAN,sp|P08865|RSSA_HUMAN,sp|P26196|DDX6_HUMAN,sp|P31483|TIA1_HUMAN,sp|Q99877|H2B1N_HUMAN,sp|P62899|RL31_HUMAN,sp|Q02543|RL18A_HUMAN,sp|Q96PK6|RBM14_HUMAN,sp|P62273|RS29_HUMAN,sp|P0CG48|UBC_HUMAN,sp|Q01469|FABP5_HUMAN,sp|P42704|LPPRC_HUMAN,sp|P84090|ERH_HUMAN,sp|P84098|RL19_HUMAN,sp|Q16777|H2A2C_HUMAN,sp|P31943|HNRH1_HUMAN,sp|P68371|TBB4B_HUMAN,sp|Q9BSJ8|ESYT1_HUMAN,sp|Q9UNX3|RL26L_HUMAN,sp|Q99879|H2B1M_HUMAN,sp|P24752|THIL_HUMAN,sp|Q08945|SSRP1_HUMAN,sp|P34932|HSP74_HUMAN,sp|P69849|NOMO3_HUMAN,sp|Q9Y277|VDAC3_HUMAN,sp|Q92544|TM9S4_HUMAN,sp|Q9NSY1|BMP2K_HUMAN,sp|O14979|HNRDL_HUMAN 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+Negative,13.75376668,10.52631579,11.11111111,5.293551492,11.9760479,13.92081737,7.90960452,9.510869565,14.0311804,12.39411502,11.52263374,13.87665198,15.95615104,20.3038674,12.58741259,11.82432432,11.898017,8.974358974,6.870229008,10.22012579,9.938271605,7.936507937,12.05479452,9.453781513,6.976744186,11.57480315,12,13.39648173,7.936507937,15.98360656,17.1990172,15.27777778,12.56038647,8.813160987,6.382978723,15.27446301,15.53398058,14.2578125,11.94968553,11.88118812,6.923076923,14.28571429,6.614785992,12.48665955,12.17948718,14.19068736,9.463722397,11.57495256,12.6984127,7.936507937,14.28571429,16.99346405,12.53602305,12.23352713,17.86982249,14.39393939,24.58333333,11.01321586,11.59695817,12.3940678,7.936507937,11.00478469,9.677419355,6.923076923,8.467741935,20.46783626,22.21311475,7.03125,16.26506024,12.18961625,10,15.6626506,13.06666667,12.8342246,12.5748503,14.69849246,11.00244499,13.86861314,15.83710407,11.84346035,13.14708299,14.01384083,14.62925852,10.74561404,10.15625,11.86440678,4.663212435,13.82007823,12.08791209,13.25301205,12.88135593,24.78873239,13.94495413,13.44410876,10.61452514,12.42937853,9.929078014,14.19068736,13.14984709,15.00615006,12.09150327,13.93258427,14.21800948,14.84662577,20.6284153,21.29514321,12.67281106,11.47186147,7.936507937,13.04347826,15,12.07778915,12.36333053,12.80701754,11.36543015,12.74509804,12.53481894,10.41666667,15.57377049,7.936507937,18.53658537,12.61061947,11.32637854,8.270676692,18.13953488,23.15484805,13.23076923,13.73333333,15.50094518,14.77832512,11.0808356,14.03508772,7.936507937,10.48387097,7.03125,11.94968553,15.7635468,16.97247706,12.26415094,12.85714286,7.936507937,14.2394822,13.64365971,14.2394822,7.936507937,9.313154831,13.06666667,11.87904968,12.60330579,10.7266436,10.59602649,13.33333333,13.28671329,14.41048035,11.37479542,16.43835616,7.936507937,9.850746269,14.19457735,16.30769231,4.87804878,6.796116505,10.45685279,7.936507937,14.11451398,24.05063291,11.44385027,14.33333333,13.97849462,19.76744186,18.1372549,10.34482759,10.84337349,10.84990958,10.95238095,25.5033557,11.55778894,8.219178082,11.86579378,21.26436782,7.936507937,11.71052632,6.923076923,10.8348135,13.96396396,13.55932203,10.76604555,8.031088083,7.936507937,10.4,5.681818182,5.231689088,3.571428571,14.45255474,14.81481481,13.62984218,14.42307692,9.693877551,6.976744186,12.24944321,13.93258427,13.22463768,10.34482759,7.936507937,9.133489461,17.348378,16.30952381,11.45662848,8.833922261,9.501557632,11.88630491,10.23809524 +Postive,14.50710288,26.97368421,16.19047619,8.614051973,12.2754491,19.15708812,12.42937853,13.31521739,11.80400891,13.99910834,13.85459534,17.40088106,14.73812424,16.57458564,12.58741259,13.17567568,23.22946176,28.84615385,22.13740458,14.77987421,11.97530864,24.6031746,14.24657534,9.978991597,21.70542636,12.99212598,13.17647059,15.0202977,24.6031746,16.18852459,13.75921376,18.05555556,13.52657005,18.33137485,28.19148936,16.22911695,21.3592233,15.4296875,14.1509434,14.65346535,23.07692308,13.30049261,24.90272374,11.41942369,25,11.75166297,12.30283912,15.37001898,13.75661376,24.6031746,14.67710372,15.68627451,14.55331412,14.0746124,18.93491124,15.45454545,16.66666667,14.0969163,15.39923954,13.13559322,24.6031746,10.52631579,22.11981567,23.07692308,26.20967742,14.61988304,20.6557377,22.65625,18.07228916,15.1241535,11.89189189,14.56736035,12.26666667,16.04278075,12.45508982,13.81909548,8.068459658,14.59854015,19.00452489,11.74047374,11.66803615,13.66782007,14.92985972,11.84210526,23.4375,13.86748844,22.79792746,15.51499348,14.56043956,12.77108434,16.15819209,16.47887324,14.67889908,15.25679758,12.5698324,15.06591337,27.30496454,11.75166297,14.57696228,16.97416974,15.35947712,14.38202247,16.11374408,13.37423313,16.66666667,15.69115816,14.05529954,16.01731602,24.6031746,13.95881007,12.5,14.12487206,15.05466779,11.40350877,11.20757695,14.70588235,14.48467967,27.77777778,12.56830601,24.6031746,24.63414634,15.92920354,16.98956781,30.07518797,10.69767442,24.16787265,12.92307692,14,20.41587902,16.74876847,13.16984559,12.28070175,24.6031746,12.09677419,22.65625,13.52201258,16.74876847,14.52599388,13.20754717,30,24.6031746,13.59223301,16.5329053,13.26860841,24.6031746,16.53084983,12.26666667,14.68682505,10.53719008,12.80276817,19.86754967,15.60606061,14.56876457,15.72052402,11.29296236,12.78538813,24.6031746,13.73134328,13.07814992,12.30769231,22.56097561,26.21359223,12.43654822,24.6031746,19.77363515,8.016877637,13.47593583,17.66666667,10.75268817,14.53488372,15.19607843,31.03448276,13.85542169,13.56238698,10.47619048,10.06711409,14.57286432,21.91780822,14.89361702,20.68965517,24.6031746,12.63157895,23.07692308,12.96625222,10.58558559,10.16949153,14.49275362,10.3626943,24.6031746,25.6,26.13636364,10.01494768,25,15.76642336,15.55555556,13.91678623,14.42307692,35.20408163,22.48062016,13.1403118,10.56179775,13.13405797,31.03448276,24.6031746,11.94379391,18.61777151,14.04761905,11.12929624,12.36749117,10.43613707,13.69509044,16.42857143 +Amide,9.599655618,7.894736842,8.888888889,4.234841193,8.383233533,8.556832695,12.42937853,10.32608696,7.126948775,8.693713776,8.504801097,6.828193833,8.038976857,6.767955801,7.342657343,7.432432432,8.21529745,5.769230769,9.160305344,10.6918239,7.901234568,4.761904762,6.164383562,7.983193277,9.302325581,9.291338583,8.235294118,7.442489851,4.761904762,7.581967213,8.108108108,11.11111111,8.212560386,7.520564042,5.319148936,8.591885442,7.766990291,7.03125,7.547169811,8.316831683,8.461538462,9.113300493,5.447470817,10.45891142,7.051282051,7.095343681,8.201892744,11.19544592,5.291005291,4.761904762,8.023483366,8.061002179,8.213256484,8.260658915,10.0591716,8.636363636,5.833333333,7.04845815,11.21673004,7.097457627,4.761904762,10.04784689,9.216589862,8.461538462,8.064516129,9.356725146,7.213114754,8.59375,3.012048193,5.643340858,8.918918919,7.338444688,5.6,5.882352941,6.946107784,10.8040201,12.46943765,7.785888078,3.619909502,10.5046344,8.545603944,9.688581315,7.51503006,6.798245614,10.9375,6.779661017,4.663212435,8.213820078,7.692307692,6.265060241,10.50847458,4.929577465,8.073394495,6.64652568,7.262569832,6.026365348,3.191489362,7.095343681,7.951070336,8.241082411,7.843137255,6.741573034,9.320695103,7.852760736,7.650273224,6.351183064,8.064516129,5.627705628,4.761904762,8.466819222,5.909090909,8.700102354,8.074011775,8.859649123,7.73480663,3.921568627,7.799442897,3.819444444,6.830601093,4.761904762,6.097560976,4.646017699,12.51862891,6.015037594,12.09302326,7.670043415,8.615384615,13.2,5.103969754,7.881773399,6.176203451,13.15789474,4.761904762,8.064516129,8.59375,7.86163522,7.060755337,7.951070336,7.232704403,4.285714286,4.761904762,8.414239482,9.63081862,9.061488673,4.761904762,9.196740396,5.6,6.695464363,7.851239669,8.30449827,5.298013245,6.818181818,6.526806527,10.48034934,8.019639935,5.936073059,4.761904762,7.76119403,10.68580542,9.846153846,3.048780488,3.883495146,7.208121827,4.761904762,6.657789614,5.063291139,7.379679144,7.333333333,13.97849462,9.302325581,6.862745098,8.965517241,8.13253012,7.414104882,10,8.053691275,7.537688442,6.849315068,8.101472995,4.597701149,4.761904762,8.552631579,8.461538462,8.170515098,9.459459459,8.13559322,11.5942029,14.76683938,4.761904762,8,5.681818182,10.01494768,12.5,10.51094891,7.407407407,9.110473458,10.57692308,6.632653061,8.527131783,8.240534521,9.662921348,6.884057971,8.965517241,5.555555556,7.494145199,7.052186178,9.761904762,8.019639935,8.833922261,6.697819315,14.47028424,10.95238095 +Large Aliphatic,16.46577701,16.44736842,12.85714286,9.047160731,17.96407186,11.87739464,15.44256121,10.32608696,12.91759465,17.56576014,11.24828532,12.11453744,15.71254568,15.19337017,12.23776224,14.69594595,13.88101983,14.1025641,18.32061069,9.748427673,14.19753086,9.523809524,11.09589041,14.3907563,17.05426357,14.33070866,15.76470588,14.47902571,9.523809524,11.06557377,11.3022113,13.19444444,13.52657005,13.51351351,12.76595745,15.99045346,17.47572816,14.6484375,16.98113208,12.67326733,16.92307692,17.24137931,10.50583658,18.35645678,13.46153846,13.08203991,14.82649842,10.24667932,14.81481481,10.31746032,13.89432485,13.07189542,13.83285303,17.65988372,12.89940828,17.72727273,6.25,15.4185022,10.2661597,14.30084746,9.523809524,18.66028708,16.12903226,16.15384615,16.53225806,11.69590643,12.70491803,17.1875,13.85542169,8.803611738,15.40540541,11.93866375,14.66666667,11.76470588,10.65868263,18.84422111,11.24694377,17.03163017,7.692307692,20.49433574,15.52999178,12.11072664,12.1242485,15.57017544,17.96875,14.48382126,8.808290155,14.34159061,9.615384615,9.397590361,13.67231638,6.338028169,17.98165138,11.78247734,12.84916201,14.50094162,3.546099291,13.08203991,13.25178389,12.54612546,11.11111111,16.40449438,8.68878357,13.37423313,15.30054645,13.69863014,14.51612903,12.12121212,10.31746032,10.29748284,14.31818182,15.55783009,14.38183347,17.28070175,15.23283346,12.74509804,8.635097493,3.819444444,17.4863388,9.523809524,12.92682927,17.03539823,15.49925484,9.022556391,9.76744186,11.79450072,11.07692308,16.93333333,15.6899811,17.73399015,15.16802906,9.649122807,9.523809524,17.74193548,17.1875,17.29559748,16.25615764,14.37308869,18.23899371,17.14285714,10.31746032,14.2394822,8.667736758,13.91585761,9.523809524,12.68917346,14.93333333,14.47084233,16.52892562,13.14878893,11.25827815,11.96969697,14.8018648,20.96069869,14.81178396,13.69863014,10.31746032,12.23880597,17.86283892,14.15384615,8.536585366,13.59223301,12.03045685,9.523809524,8.78828229,10.97046414,16.68449198,12.66666667,15.05376344,11.62790698,12.74509804,10.34482759,18.37349398,16.63652803,18.57142857,11.40939597,12.56281407,15.06849315,13.58428805,9.195402299,11.11111111,13.55263158,16.92307692,15.45293073,11.26126126,12.20338983,18.63354037,7.512953368,9.523809524,11.2,9.090909091,6.427503737,12.5,21.02189781,11.85185185,19.15351506,14.42307692,15.81632653,16.27906977,8.240534521,11.01123596,17.21014493,10.34482759,10.31746032,14.75409836,10.86036671,11.66666667,14.7299509,13.07420495,17.44548287,10.33591731,8.571428571 +Small Aliphatic,18.76883341,21.05263158,17.61904762,24.54282964,24.5508982,20.30651341,24.10546139,18.75,23.60801782,18.23450736,22.77091907,18.28193833,19.48842875,15.74585635,30.41958042,26.35135135,14.44759207,21.15384615,26.71755725,23.74213836,22.5308642,23.01587302,31.23287671,22.37394958,28.68217054,22.5984252,21.41176471,21.10960758,23.01587302,19.87704918,20.27027027,17.36111111,14.00966184,20.79905993,20.74468085,18.61575179,10.19417476,17.96875,23.89937107,27.92079208,30,18.96551724,31.51750973,19.53041622,15.38461538,23.72505543,20.18927445,21.44212524,32.27513228,22.22222222,20.15655577,20.69716776,19.30835735,17.12693798,18.93491124,18.48484848,19.58333333,26.43171806,21.48288973,21.08050847,23.80952381,22.48803828,18.89400922,30,18.5483871,13.4502924,17.04918033,28.90625,21.68674699,24.15349887,25.67567568,17.96276013,21.06666667,20.85561497,25.86826347,15.82914573,25.18337408,19.22141119,21.26696833,16.16889804,22.02136401,21.79930796,19.33867735,21.92982456,14.0625,26.04006163,18.13471503,17.86179922,25.82417582,25.30120482,16.83615819,26.33802817,20.73394495,21.75226586,18.7150838,26.3653484,17.0212766,23.50332594,18.55249745,18.69618696,28.43137255,17.75280899,24.80252765,17.42331288,14.20765027,16.18929016,26.26728111,27.48917749,22.22222222,20.36613272,25.68181818,17.70726714,14.55004205,20.35087719,22.17837411,33.33333333,24.79108635,16.31944444,20.21857923,22.22222222,15.85365854,26.10619469,19.52309985,19.54887218,23.72093023,12.51808973,20.61538462,13.2,20.2268431,21.42857143,24.70481381,23.68421053,23.01587302,24.19354839,29.6875,24.52830189,15.43513957,22.47706422,22.64150943,14.28571429,23.01587302,18.12297735,25.68218299,18.44660194,23.01587302,20.60535506,20.8,22.46220302,23.14049587,25.25951557,27.81456954,22.27272727,22.96037296,15.72052402,22.25859247,21.46118721,22.22222222,28.65671642,19.93620415,16.92307692,19.51219512,32.03883495,16.85279188,22.22222222,17.11051931,19.83122363,24.9197861,20,20.43010753,14.53488372,19.11764706,17.24137931,23.4939759,28.02893309,22.38095238,19.46308725,21.6080402,25.34246575,20.78559738,22.4137931,20.63492063,22.23684211,30,24.68916519,22.07207207,24.06779661,16.97722567,23.05699482,22.22222222,21.6,17.61363636,32.58594918,14.28571429,15.91240876,20,18.57962697,12.5,14.28571429,29.45736434,26.72605791,22.02247191,20.65217391,17.93103448,22.22222222,30.91334895,15.79689704,19.28571429,22.58592471,23.67491166,18.06853583,17.91559001,23.80952381 +Aromatic,8.243650452,5.921052632,7.46031746,1.684311838,5.389221557,5.874840358,6.403013183,10.32608696,9.576837416,8.782880071,7.818930041,5.50660793,6.942752741,7.458563536,7.342657343,7.094594595,8.498583569,5.128205128,3.053435115,7.547169811,7.530864198,5.555555556,4.383561644,10.08403361,3.100775194,8.661417323,7.764705882,8.525033829,5.555555556,10.04098361,9.705159705,5.555555556,6.763285024,5.757931845,5.85106383,9.546539379,7.281553398,10.3515625,5.031446541,6.534653465,3.076923077,7.142857143,5.447470817,6.723585912,7.051282051,9.534368071,8.517350158,11.19544592,3.174603175,5.555555556,6.653620352,8.496732026,4.899135447,8.793604651,5.443786982,8.636363636,6.25,6.167400881,11.21673004,10.69915254,5.555555556,10.04784689,6.451612903,3.076923077,9.274193548,9.941520468,3.93442623,3.125,7.228915663,6.997742664,8.918918919,6.790799562,8.533333333,9.625668449,4.431137725,8.165829146,4.645476773,7.299270073,13.12217195,9.47476828,8.463434675,5.53633218,7.915831663,12.28070175,3.90625,7.550077042,7.25388601,7.170795306,9.615384615,10.60240964,8.248587571,5.070422535,3.302752294,9.365558912,16.75977654,5.461393597,9.929078014,9.534368071,7.135575943,8.425584256,5.555555556,10.11235955,9.952606635,9.447852761,7.37704918,7.97011208,7.142857143,6.70995671,5.555555556,13.50114416,8.636363636,6.755373593,7.232968881,7.807017544,8.918705604,7.843137255,10.30640669,10.41666667,9.016393443,5.555555556,5.243902439,5.088495575,5.21609538,7.518796992,2.325581395,5.426917511,11.38461538,8.933333333,5.103969754,4.187192118,8.628519528,10.52631579,5.555555556,8.064516129,3.125,5.031446541,8.702791461,5.810397554,5.031446541,5.714285714,5.555555556,11.32686084,10.11235955,11.32686084,5.555555556,8.498253783,8.533333333,9.719222462,5.785123967,9.342560554,3.311258278,9.242424242,7.342657343,3.930131004,8.75613748,6.849315068,5.555555556,7.76119403,7.177033493,7.692307692,6.707317073,5.825242718,7.918781726,5.555555556,4.593874834,8.016877637,5.561497326,10.33333333,6.451612903,9.88372093,8.333333333,6.206896552,6.325301205,5.786618445,10,6.711409396,11.05527638,7.534246575,5.89198036,7.471264368,5.555555556,11.18421053,3.076923077,8.525754885,9.684684685,9.152542373,6.211180124,11.13989637,5.555555556,6.4,11.36363636,9.417040359,12.5,3.941605839,5.925925926,7.890961263,10.57692308,3.06122449,3.100775194,11.35857461,9.662921348,6.702898551,6.206896552,5.555555556,4.683840749,8.885754584,6.904761905,8.75613748,11.30742049,16.04361371,6.804478898,10 +Hydroxy,10.99870857,7.894736842,13.17460317,23.43599615,11.67664671,12.77139208,13.1826742,15.76086957,11.58129176,11.45786893,12.07133059,16.96035242,12.05846529,11.32596685,10.48951049,11.99324324,8.21529745,7.051282051,9.160305344,10.8490566,13.20987654,17.46031746,6.301369863,13.55042017,8.527131783,10.62992126,12.23529412,10.28416779,16.66666667,9.631147541,10.56511057,11.11111111,20.28985507,15.39365452,12.23404255,10.50119332,10.67961165,10.7421875,11.63522013,8.316831683,6.923076923,11.8226601,7.392996109,11.09925293,10.8974359,11.30820399,19.24290221,9.297912713,8.994708995,17.46031746,13.11154599,10.02178649,17.86743516,12.35465116,8.047337278,8.939393939,9.583333333,9.251101322,9.315589354,11.44067797,16.66666667,9.090909091,9.677419355,6.923076923,5.241935484,11.11111111,9.836065574,7.8125,11.44578313,10.60948081,10,16.75794085,13.6,12.8342246,14.01197605,9.924623116,17.3594132,12.16545012,10.40723982,11.32852729,11.91454396,14.01384083,12.3246493,13.81578947,9.375,10.93990755,16.58031088,11.2125163,13.46153846,13.4939759,10.96045198,10.42253521,12.11009174,14.95468278,10.05586592,10.73446328,21.9858156,11.52993348,16.71763507,12.48462485,13.39869281,11.46067416,7.898894155,13.86503067,11.61202186,12.95143213,10.13824885,11.25541126,18.25396825,11.67048055,11.13636364,14.53428864,16.14802355,13.59649123,14.91712707,8.823529412,13.64902507,21.18055556,10.10928962,18.25396825,9.390243902,9.292035398,12.07153502,11.27819549,16.74418605,7.742402315,14.15384615,11.46666667,10.77504726,8.128078818,11.26248865,8.771929825,17.46031746,12.90322581,7.03125,11.63522013,11.65845649,11.77370031,12.26415094,8.571428571,16.66666667,10.67961165,8.025682183,10.03236246,17.46031746,11.40861467,13.6,7.991360691,13.63636364,9.688581315,12.58278146,13.33333333,9.906759907,13.10043668,14.89361702,11.87214612,17.46031746,12.53731343,8.931419458,13.53846154,15.85365854,8.737864078,18.98477157,18.25396825,18.9081225,14.34599156,11.3368984,11.66666667,12.90322581,11.04651163,12.25490196,9.655172414,11.44578313,11.93490054,9.047619048,10.73825503,11.05527638,7.534246575,13.99345336,7.471264368,18.25396825,13.15789474,6.923076923,11.90053286,12.83783784,12.88135593,12.42236025,13.73056995,18.25396825,9.6,11.93181818,17.18983558,7.142857143,13.13868613,15.55555556,10.40172166,11.53846154,8.673469388,7.751937984,11.80400891,12.80898876,12.77173913,8.965517241,16.66666667,11.47540984,14.66854725,12.26190476,14.89361702,16.96113074,11.83800623,14.38415159,11.9047619 +,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Number of Y,128,3,17,10,7,12,10,10,19,72,29,10,22,24,5,18,8,5,3,19,37,5,5,31,3,48,7,21,5,29,19,1,6,12,5,12,5,24,5,13,3,12,6,29,6,19,6,21,3,5,10,16,13,118,18,22,5,7,21,36,5,12,6,3,11,4,16,3,6,22,13,23,15,10,10,28,7,13,17,29,38,12,24,19,3,24,4,16,27,22,25,8,9,24,18,9,22,19,24,46,10,26,40,30,25,24,11,12,5,14,11,22,31,35,46,3,28,23,19,5,16,10,20,4,2,24,11,18,14,7,40,5,5,4,3,5,21,13,5,2,5,16,36,16,5,28,15,19,7,9,1,25,21,3,45,7,5,9,17,12,4,4,85,5,31,9,16,12,4,4,9,6,8,16,12,2,5,8,28,6,5,28,3,19,16,7,13,17,5,4,8,47,3,9,2,48,8,3,3,24,16,21,6,5,11,22,23,45,12,37,23,24 +Number of pY,2,1,1,1,1,2,1,1,2,1,1,1,1,4,1,2,1,2,1,2,1,2,1,1,1,2,2,1,2,2,1,1,1,1,1,1,1,1,1,1,1,4,1,3,1,2,1,1,2,2,1,1,1,2,1,1,1,2,1,1,2,5,1,1,1,1,1,1,2,3,1,1,9,3,1,1,1,2,1,1,1,1,1,1,1,2,2,1,1,1,1,3,1,1,1,1,1,2,1,1,1,3,3,1,3,1,3,4,2,2,1,1,1,1,1,1,1,1,1,2,1,1,1,1,1,1,1,1,1,1,2,2,2,3,1,1,1,2,1,2,2,1,3,1,2,1,9,2,1,1,1,1,2,3,1,1,2,2,3,1,2,4,1,2,1,1,1,1,1,1,1,1,2,1,6,1,1,1,1,1,2,1,1,1,1,2,1,1,2,2,1,1,1,9,1,1,1,1,1,1,1,1,1,2,1,1,2,1,1,2,1,1 +Total AAs,4646,152,630,2078,334,783,531,368,449,2243,729,454,821,724,286,592,353,156,131,636,1620,126,730,952,129,1270,425,739,126,488,814,144,207,851,188,419,206,512,318,505,130,406,257,937,156,451,317,527,189,126,511,459,694,4128,845,660,240,227,526,944,126,209,217,130,248,171,1220,128,166,443,370,913,375,187,835,796,409,411,221,971,1217,578,998,456,128,649,193,767,364,415,885,710,545,662,358,531,282,451,981,1626,306,445,633,815,732,803,434,462,126,437,440,977,1189,1140,1267,102,359,288,366,126,820,452,671,133,215,1382,325,750,529,406,1101,114,126,124,128,318,609,654,318,70,126,309,623,309,126,859,375,463,484,289,151,660,858,229,1222,219,126,335,627,650,164,103,1970,126,1502,237,935,300,93,172,204,145,332,553,210,149,199,146,1222,174,126,760,130,563,444,295,483,386,126,125,176,669,56,685,135,1394,104,196,129,449,445,1104,145,126,427,709,840,1222,283,642,1161,420
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/C and D finder/test-data/input6.csv Tue May 22 18:17:33 2018 -0400 @@ -0,0 +1,246 @@ +Substrates,Species,Reference,-7,-6,-5,-4,-3,-2,-1,0,1,2,3,4,5,6,7,,,,,Phosphite, +,,sp|Q8NE71|ABCF1_HUMAN,,,,,,G,N,Y,M,T,F,K,,,,,,,GNYMTFK,LHYYRGNYMTFKKMY, +,,sp|P13639|EF2_HUMAN,,,,K,E,D,L,Y,L,K,P,I,Q,R,,,,,KEDLYLKPIQR,PGKKEDLYLKPIQRT, +,,sp|O43390|HNRPR_HUMAN,,,,,,,D,Y,A,F,V,H,F,E,D,,,,DYAFVHFED,RVKKLKDYAFVHFED, +,,sp|P26641|EF1G_HUMAN,,,,,,,E,Y,F,S,W,E,G,A,F,,,,EYFSWEGAF,TQTLVREYFSWEGAF, +,,sp|P09211|GSTP1_HUMAN; sp|GSTP1_HUMAN,,,Y,I,S,L,I,Y,T,N,Y,E,A,G,K,,,,YISLIYTNYEAGK,CKYISLIYTNYEAGK, +,,sp|P62899|RL31_HUMAN,,,,,,,L,Y,T,L,V,T,Y,V,P,,,,LYTLVTYVP,EDSPNKLYTLVTYVP, +,,sp|P78347|GTF2I_HUMAN,,,,T,V,E,D,Y,F,C,F,C,Y,G,K,,,,TVEDYFCFCYGK,LRKTVEDYFCFCYGK, +,,sp|Q08J23|NSUN2_HUMAN,,L,A,Q,E,G,I,Y,T,L,Y,P,F,I,N,,,,LAQEGIYTLYPFIN,RLAQEGIYTLYPFIN, +,,sp|P60842|IF4A1_HUMAN,,,,,D,Q,I,Y,D,I,F,Q,K,,,,,,DQIYDIFQK,RGFKDQIYDIFQKLN, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,T,V,P,I,Y,E,G,Y,A,L,P,H,A,I,L,,,,TVPIYEGYALPHAIL,TVPIYEGYALPHAIL, +,,sp|Q02790|FKBP4_HUMAN,,G,E,H,S,I,V,Y,L,K,P,S,Y,A,F,,,,GEHSIVYLKPSYAF,KGEHSIVYLKPSYAF, +,,sp|Q9NR30|DDX21_HUMAN,,,,,,S,T,Y,E,Q,V,D,L,I,G,,,,STYEQVDLIG,KKYMKSTYEQVDLIG, +,,sp|P31939|PUR9_HUMAN,,,,,N,G,N,Y,C,V,L,Q,M,D,Q,,,,NGNYCVLQMDQ,SKKKNGNYCVLQMDQ, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,,K,D,L,Y,A,N,T,V,L,S,G,,,,KDLYANTVLSG,VDIRKDLYANTVLSG, +,,sp|P62805|H4_HUMAN,,,I,S,G,L,I,Y,E,E,T,R,,,,,,,ISGLIYEETR,KRISGLIYEETRGVL, +,,sp|P22234|PUR6_HUMAN,,,,,,E,V,Y,E,L,L,D,S,P,G,,,,EVYELLDSPG,EGKTKEVYELLDSPG, +,,sp|P30086|PEBP1_HUMAN,,,,,,,L,Y,E,Q,L,S,G,K,,,,,LYEQLSGK,DDYVPKLYEQLSGK, +,,sp|Q08945|SSRP1_HUMAN,,N,M,S,G,S,L,Y,E,M,V,S,R,,,,,,NMSGSLYEMVSR,KNMSGSLYEMVSRVM, +,,sp|Q9Y3I0|RTCB_HUMAN,G,M,A,A,A,G,N,Y,A,W,V,N,R,,,,,,GMAAAGNYAWVNR,GMAAAGNYAWVNRSS, +,,sp|P52272|HNRPM_HUMAN,N,E,C,G,H,V,L,Y,A,D,I,K,,,,,,,NECGHVLYADIK,NECGHVLYADIKMEN, +,,sp|P38919|IF4A3_HUMAN,,,,,E,Q,I,Y,D,V,Y,R,,,,,,,EQIYDVYR,KGFKEQIYDVYRYLP, +,,sp|Q14258|TRI25_HUMAN,,,,F,D,T,I,Y,Q,I,L,L,K,,,,,,FDTIYQILLK,NSKFDTIYQILLKKK, +,,sp|P57764|GSDMD_HUMAN,,S,R,G,D,N,V,Y,V,V,T,E,V,L,Q,,,,SRGDNVYVVTEVLQ,RSRGDNVYVVTEVLQ, +,,sp|P41250|GARS_HUMAN,,,,,,T,S,Y,G,W,I,E,I,V,G,,,,TSYGWIEIVG,DAESKTSYGWIEIVG, +,,sp|P62805|H4_HUMAN,V,T,A,M,D,V,V,Y,A,L,K,,,,,,,,VTAMDVVYALK,VTAMDVVYALKRQGR, +,,sp|Q15393|SF3B3_HUMAN,,,,,,,D,Y,I,V,V,G,S,D,S,,,,DYIVVGSDS,LTGGTKDYIVVGSDS, +,,sp|P60842|IF4A1_HUMAN,,G,F,K,D,Q,I,Y,D,I,F,Q,K,,,,,,GFKDQIYDIFQK,RGFKDQIYDIFQKLN, +,,sp|Q9BTM1|H2AJ_HUMAN; sp|Q99878|H2A1J_HUMAN; sp|Q96KK5|H2A1H_HUMAN; sp|Q6FI13|H2A2A_HUMAN; sp|Q16777|H2A2C_HUMAN; sp|P0C0S8|H2A1_HUMAN; sp|Q96QV6|H2A1A_HUMAN; sp|Q93077|H2A1C_HUMAN,,,,,K,G,N,Y,A,E,R,,,,,,,,KGNYAER,RLLRKGNYAERVGAG,RLLRKGNYAERIGAG +,,sp|P52565|GDIR1_HUMAN,,,I,D,K,T,D,Y,M,V,G,S,Y,G,P,,,,IDKTDYMVGSYGP,VKIDKTDYMVGSYGP, +,,sp|P08865|RSSA_HUMAN,,,,S,D,G,I,Y,I,I,N,L,K,,,,,,SDGIYIINLK,KRKSDGIYIINLKRT, +,,sp|Q07666|KHDR1_HUMAN,K,K,D,D,E,E,N,Y,L,D,L,F,S,H,K,,,,KKDDEENYLDLFSHK,KKDDEENYLDLFSHK, +,,sp|P54727|RD23B_HUMAN,,,,,A,V,E,Y,L,L,M,G,I,P,G,,,,AVEYLLMGIPG,NPDRAVEYLLMGIPG, +,,sp|O43390|HNRPR_HUMAN,,,,,L,K,D,Y,A,F,V,H,F,E,D,,,,LKDYAFVHFED,RVKKLKDYAFVHFED, +,,sp|Q02543|RL18A_HUMAN,,S,S,G,E,I,V,Y,C,G,Q,V,F,E,K,,,,SSGEIVYCGQVFEK,KSSGEIVYCGQVFEK, +,,sp|P12956|XRCC6_HUMAN,,,,,,N,I,Y,V,L,Q,E,L,D,N,,,,NIYVLQELDN,SVNFKNIYVLQELDN, +,,sp|P49368|TCPG_HUMAN,I,S,D,L,A,Q,H,Y,L,M,R,,,,,,,,ISDLAQHYLMR,ISDLAQHYLMRANIT, +,,sp|Q16881|TRXR1_HUMAN,,,,,S,Y,D,Y,D,L,I,I,I,G,G,,,,SYDYDLIIIGG,DLPKSYDYDLIIIGG, +,,sp|P84090|ERH_HUMAN,,,,,,,I,Y,V,L,L,R,,,,,,,IYVLLR,DWIKEKIYVLLRRQA, +,,sp|Q9UHA4|LTOR3_HUMAN,,,S,I,I,C,Y,Y,N,T,Y,Q,V,V,Q,,,,SIICYYNTYQVVQ,NKSIICYYNTYQVVQ, +,,sp|Q14204|DYHC1_HUMAN,M,D,L,E,K,P,N,Y,I,V,P,D,Y,M,P,,,,MDLEKPNYIVPDYMP,MDLEKPNYIVPDYMP, +,,sp|Q9UHA4|LTOR3_HUMAN,,,,S,I,I,C,Y,Y,N,T,Y,Q,V,V,,,,SIICYYNTYQVV,KNKSIICYYNTYQVV, +,,sp|O76094|SRP72_HUMAN,,,,,,E,L,Y,G,Q,V,L,Y,R,,,,,ELYGQVLYR,TDKLKELYGQVLYRL, +,,sp|Q96QK1|VPS35_HUMAN,S,E,D,P,D,Q,Q,Y,L,I,L,N,T,A,R,,,,SEDPDQQYLILNTAR,SEDPDQQYLILNTAR, +,,sp|P62899|RL31_HUMAN,,L,Y,T,L,V,T,Y,V,P,V,T,T,F,K,,,,LYTLVTYVPVTTFK,KLYTLVTYVPVTTFK, +,,sp|Q16778|H2B2E_HUMAN; sp|P33778|H2B1B_HUMAN; sp|P23527|H2B1O_HUMAN; sp|P06899|H2B1J_HUMAN; sp|Q8N257|H2B3B_HUMAN; sp|Q6DRA6|H2B2D_HUMAN; sp|Q6DN03|H2B2C_HUMAN,,K,E,S,Y,S,I,Y,V,Y,K,,,,,,,,KESYSIYVYK,RKESYSIYVYKVLKQ,RKESYSIYVYKVLKR +,,sp|O14979|HNRDL_HUMAN,,,,D,L,T,E,Y,L,S,R,,,,,,,,DLTEYLSR,SKKDLTEYLSRFGEV, +,,sp|P09211|GSTP1_HUMAN; sp|GSTP1_HUMAN,,,,,,,P,Y,T,V,V,Y,F,P,V,,,,PYTVVYFPV,MPPYTVVYFPV,PPYTVVYFPV +,,sp|Q9NSY1|BMP2K_HUMAN,L,L,N,D,G,G,N,Y,V,L,C,D,F,G,S,,,,LLNDGGNYVLCDFGS,LLNDGGNYVLCDFGS, +,,sp|Q13263|TIF1B_HUMAN,P,G,S,T,T,E,D,Y,N,L,I,V,I,E,R,,,,PGSTTEDYNLIVIER,PGSTTEDYNLIVIER, +,,sp|P07948|LYN_HUMAN,,,,,,,L,Y,A,V,V,T,R,,,,,,LYAVVTR,HDKLVRLYAVVTREE, +,,sp|P68104|EF1A1_HUMAN,,,,G,S,F,K,Y,A,W,V,L,D,K,,,,,GSFKYAWVLDK,MGKGSFKYAWVLDKL, +,,sp|P11021|BIP_HUMAN,,,,K,T,K,P,Y,I,Q,V,D,I,G,G,,,,KTKPYIQVDIGG,VEKKTKPYIQVDIGG, +,,sp|Q9Y6E2|BZW2_HUMAN,,,V,Q,E,Y,C,Y,D,N,I,H,F,M,K,,,,VQEYCYDNIHFMK,QKVQEYCYDNIHFMK, +,,sp|P19105|ML12A_HUMAN; sp|O14950|ML12B_HUMAN,,,,G,N,F,N,Y,I,E,F,T,R,,,,,,GNFNYIEFTR,DKKGNFNYIEFTRIL, +,,sp|Q8TDN6|BRX1_HUMAN,,,K,K,Q,D,L,Y,M,W,L,S,N,S,P,,,,KKQDLYMWLSNSP,AKKKQDLYMWLSNSP, +,,sp|P00491|PNPH_HUMAN,,E,L,Q,E,G,T,Y,V,M,V,A,G,P,S,,,,ELQEGTYVMVAGPS,RELQEGTYVMVAGPS, +,,sp|P07900|HS90A_HUMAN,,,,,,H,I,Y,Y,I,T,G,E,T,K,,,,HIYYITGETK,KENQKHIYYITGETK, +,,sp|P30086|PEBP1_HUMAN,,,,,,,L,Y,T,L,V,L,T,D,P,,,,LYTLVLTDP,GLDSGKLYTLVLTDP, +,,sp|Q9UNX3|RL26L_HUMAN; sp|P61254|RL26_HUMAN,,,,,Y,V,I,Y,I,E,R,,,,,,,,YVIYIER,YRKKYVIYIERVQRE, +,,sp|P09211|GSTP1_HUMAN; sp|GSTP1_HUMAN,,,,,,,,Y,I,S,L,I,Y,T,N,,,,YISLIYTN,VEDLRCKYISLIYTN, +,,sp|P62805|H4_HUMAN,V,T,A,M,D,V,V,Y,A,L,K,R,,,,,,,VTAMDVVYALKR,VTAMDVVYALKRQGR, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,,,,G,Y,S,F,T,T,T,A,E,,,,GYSFTTTAE,KILTERGYSFTTTAE, +,,sp|P19338|NUCL_HUMAN,,,,,,,G,Y,A,F,I,E,F,A,S,,,,GYAFIEFAS,QNGKSKGYAFIEFAS, +,,sp|P07195|LDHB_HUMAN,,M,V,V,E,S,A,Y,E,V,I,K,,,,,,,MVVESAYEVIK,KMVVESAYEVIKLKG, +,,sp|O60506|HNRPQ_HUMAN,,,,,,,G,Y,A,F,V,T,F,C,T,,,,GYAFVTFCT,LTGLNRGYAFVTFCT, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,,,D,L,Y,A,N,T,V,L,S,G,,,,DLYANTVLSG,VDIRKDLYANTVLSG, +,,sp|P50395|GDIB_HUMAN,,,,K,S,D,I,Y,V,C,M,I,S,F,A,,,,KSDIYVCMISFA,VNRKSDIYVCMISFA, +,,sp|Q07666|KHDR1_HUMAN,,K,D,D,E,E,N,Y,L,D,L,F,S,H,K,,,,KDDEENYLDLFSHK,KKDDEENYLDLFSHK, +,,sp|P55060|XPO2_HUMAN,,H,K,D,A,A,I,Y,L,V,T,S,L,A,S,,,,HKDAAIYLVTSLAS,KHKDAAIYLVTSLAS, +,,sp|P08865|RSSA_HUMAN,,,,S,D,G,I,Y,I,I,N,L,K,R,,,,,SDGIYIINLKR,KRKSDGIYIINLKRT, +,,sp|P13796|PLSL_HUMAN,,,,,,,,Y,A,F,V,N,W,I,N,,,,YAFVNWIN,SYSEEEKYAFVNWIN, +,,sp|P02786|TFR1_HUMAN,K,D,E,N,L,A,L,Y,V,E,N,Q,F,R,,,,,KDENLALYVENQFR,KDENLALYVENQFRE, +,,sp|Q01469|FABP5_HUMAN,,,,,,,I,Y,E,K,V,E,,,,,,,IYEKVE,NVTCTRIYEKVE, +,,sp|Q5JSH3|WDR44_HUMAN,,,,,,,,Y,N,T,E,G,R,V,S,,,,YNTEGRVS,FNNMRMKYNTEGRVS, +,,sp|O75368|SH3L1_HUMAN,,,,,,G,D,Y,D,A,F,F,E,A,R,,,,GDYDAFFEAR,ESQYRGDYDAFFEAR, +,,sp|P49411|EFTU_HUMAN,L,L,D,A,V,D,T,Y,I,P,V,P,A,R,,,,,LLDAVDTYIPVPAR,LLDAVDTYIPVPARD, +,,sp|Q16531|DDB1_HUMAN,,,,,G,A,V,Y,S,M,V,E,F,N,G,,,,GAVYSMVEFNG,KEVKGAVYSMVEFNG, +,,sp|Q5R372|RBG1L_HUMAN,T,N,A,G,D,A,I,Y,E,V,V,S,L,Q,R,,,,TNAGDAIYEVVSLQR,TNAGDAIYEVVSLQR, +,,sp|Q02880|TOP2B_HUMAN,,H,F,D,G,E,D,Y,T,C,I,T,F,Q,P,,,,HFDGEDYTCITFQP,KHFDGEDYTCITFQP, +,,sp|P68104|EF1A1_HUMAN,,,,,,,,Y,Y,V,T,I,I,D,A,,,,YYVTIIDA,WKFETSKYYVTIIDA, +,,sp|P14625|ENPL_HUMAN,,,E,E,A,S,D,Y,L,E,L,D,T,I,K,,,,EEASDYLELDTIK,LKEEASDYLELDTIK, +,,sp|P52788|SPSY_HUMAN,,,,,,,L,Y,C,P,V,E,F,S,K,,,,LYCPVEFSK,EEQLGRLYCPVEFSK, +,,sp|Q9UKM9|RALY_HUMAN,,,,,,,G,Y,A,F,V,Q,Y,S,N,,,,GYAFVQYSN,GCSVHKGYAFVQYSN, +,,sp|P08238|HS90B_HUMAN,,,,,,,F,Y,E,A,F,S,K,,,,,,FYEAFSK,KENYKKFYEAFSKNL, +,,sp|P62750|RL23A_HUMAN,,,,,L,D,H,Y,A,I,I,K,,,,,,,LDHYAIIK,RRNKLDHYAIIKFPL, +,,sp|Q9UNN5|FAF1_HUMAN,,,,,,N,V,Y,D,L,T,S,I,P,V,,,,NVYDLTSIPV,QEVKRNVYDLTSIPV, +,,sp|Q96PK6|RBM14_HUMAN,A,G,Q,P,S,A,A,Y,L,S,M,S,Q,G,A,,,,AGQPSAAYLSMSQGA,AGQPSAAYLSMSQGA, +,,sp|P39656|OST48_HUMAN,,,,L,P,D,V,Y,G,V,F,Q,F,K,,,,,LPDVYGVFQFK,QFKLPDVYGVFQFKV, +,,sp|P08238|HS90B_HUMAN,D,D,I,T,Q,E,E,Y,G,E,F,Y,K,,,,,,DDITQEEYGEFYK,DDITQEEYGEFYKSL, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,,,L,C,Y,V,A,L,D,F,E,Q,,,,LCYVALDFEQ,DIKEKLCYVALDFEQ, +,,sp|P11940|PABP1_HUMAN,,,,,,,G,Y,G,F,V,H,F,E,T,,,,GYGFVHFET,DENGSKGYGFVHFET, +,,sp|P54136|SYRC_HUMAN,,,,,,,A,Y,Q,C,V,V,L,L,Q,,,,AYQCVVLLQ,EEFKKRAYQCVVLLQ, +,,sp|P62917|RL8_HUMAN,,,,A,S,G,N,Y,A,T,V,I,S,H,N,,,,ASGNYATVISHN,LARASGNYATVISHN, +,,sp|P34932|HSP74_HUMAN,,,,S,N,L,A,Y,D,I,V,Q,L,P,T,,,,SNLAYDIVQLPT,AEKSNLAYDIVQLPT, +,,sp|P06733|ENOA_HUMAN,S,G,A,S,T,G,I,Y,E,A,L,E,L,R,D,,,,SGASTGIYEALELRD,SGASTGIYEALELRD, +,,sp|P62987|RL40_HUMAN; sp|P62979|RS27A_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG48|UBC_HUMAN; sp|P0CG47|UBB_HUMAN; sp|P0CG47|UBB_HUMAN; sp|P0CG47|UBB_HUMAN,,,,T,L,S,D,Y,N,I,Q,K,,,,,,,TLSDYNIQK,DGRTLSDYNIQKEST, +,,sp|P50395|GDIB_HUMAN,,,,,S,D,I,Y,V,C,M,I,S,F,A,,,,SDIYVCMISFA,VNRKSDIYVCMISFA, +,,sp|P22061|PIMT_HUMAN,,,,,,M,G,Y,A,E,E,A,P,Y,D,,,,MGYAEEAPYD,VGDGRMGYAEEAPYD, +,,sp|P13639|EF2_HUMAN,,,,,,C,L,Y,A,S,V,L,T,A,Q,,,,CLYASVLTAQ,PTARRCLYASVLTAQ, +,,sp|P62195|PRS8_HUMAN,,,V,P,D,S,T,Y,E,M,I,G,G,L,D,,,,VPDSTYEMIGGLD,EKVPDSTYEMIGGLD, +,,sp|P48444|COPD_HUMAN,,,,,,,N,Y,C,N,I,Q,V,T,K,,,,NYCNIQVTK,SFVSKKNYCNIQVTK, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,V,T,H,T,V,P,I,Y,E,G,Y,A,L,P,H,,,,VTHTVPIYEGYALPH,VTHTVPIYEGYALPH, +,,sp|Q14699|RFTN1_HUMAN,,,,,,,Q,Y,Y,P,V,T,I,P,L,,,,QYYPVTIPL,SHQKCRQYYPVTIPL, +,,sp|P31939|PUR9_HUMAN,,,K,K,N,G,N,Y,C,V,L,Q,M,D,Q,,,,KKNGNYCVLQMDQ,SKKKNGNYCVLQMDQ, +,,sp|P26196|DDX6_HUMAN,,,G,V,T,Q,Y,Y,A,Y,V,T,E,R,,,,,GVTQYYAYVTER,LKGVTQYYAYVTERQ, +,,sp|P11586|C1TC_HUMAN,,,D,D,S,N,L,Y,I,N,V,K,,,,,,,DDSNLYINVK,NRDDSNLYINVKLKA, +,,sp|Q9UM73|ALK_HUMAN,H,G,A,F,G,E,V,Y,E,G,Q,V,S,G,M,,,,HGAFGEVYEGQVSGM,HGAFGEVYEGQVSGM, +,,sp|P22234|PUR6_HUMAN,,,,T,K,E,V,Y,E,L,L,D,S,P,G,,,,TKEVYELLDSPG,EGKTKEVYELLDSPG, +,,sp|P68104|EF1A1_HUMAN,,E,H,A,L,L,A,Y,T,L,G,V,K,,,,,,EHALLAYTLGVK,REHALLAYTLGVKQL, +,,sp|O75368|SH3L1_HUMAN,,,E,N,N,A,V,Y,A,F,L,G,L,T,A,,,,ENNAVYAFLGLTA,ARENNAVYAFLGLTA, +,,sp|P68104|EF1A1_HUMAN,,,,,,,Y,Y,V,T,I,I,D,A,P,,,,YYVTIIDAP,KFETSKYYVTIIDAP, +,,sp|P09211|GSTP1_HUMAN,,,,,M,P,P,Y,T,V,V,Y,F,P,V,,,,MPPYTVVYFPV,MPPYTVVYFPV, +,,sp|Q9BUQ8|DDX23_HUMAN,E,E,S,D,Q,G,P,Y,A,I,I,L,A,P,T,,,,EESDQGPYAIILAPT,EESDQGPYAIILAPT, +,,sp|P63173|RL38_HUMAN,,,,,,,,Y,L,Y,T,L,V,I,T,,,,YLYTLVIT,FKVRCSRYLYTLVIT, +,,sp|P60842|IF4A1_HUMAN,,,,,,Q,F,Y,I,N,V,E,R,,,,,,QFYINVER,LEGIRQFYINVEREE, +,,sp|Q92544|TM9S4_HUMAN,,,,T,Q,L,P,Y,E,Y,Y,S,L,P,F,,,,TQLPYEYYSLPF,SSRTQLPYEYYSLPF, +,,sp|P13796|PLSL_HUMAN,S,V,G,T,Q,H,S,Y,S,E,E,E,K,Y,A,,,,SVGTQHSYSEEEKYA,SVGTQHSYSEEEKYA, +,,sp|P26599|PTBP1_HUMAN,,,,G,Q,P,I,Y,I,Q,F,S,N,H,K,,,,GQPIYIQFSNHK,VLRGQPIYIQFSNHK, +,,sp|P07900|HS90A_HUMAN,D,D,I,T,N,E,E,Y,G,E,F,Y,K,,,,,,DDITNEEYGEFYK,DDITNEEYGEFYKSL, +,,sp|P55884|EIF3B_HUMAN,,,,,N,G,D,Y,L,C,V,K,,,,,,,NGDYLCVK,HWQKNGDYLCVKVDR, +,,sp|P63010|AP2B1_HUMAN,,,,Q,G,H,I,Y,M,E,M,N,F,T,N,,,,QGHIYMEMNFTN,THRQGHIYMEMNFTN, +,,sp|P60891|PRPS1_HUMAN; sp|P21108|PRPS3_HUMAN; sp|P11908|PRPS2_HUMAN,,,,,,,V,Y,A,I,L,T,H,G,I,,,,VYAILTHGI,SAGATRVYAILTHGI,SAGATKVYAILTHGI +,,sp|P68363|TBA1B_HUMAN; sp|Q71U36|TBA1A_HUMAN; sp|Q9BQE3|TBA1C_HUMAN,,E,D,A,A,N,N,Y,A,R,,,,,,,,,EDAANNYAR,KEDAANNYARGHYTI, +,,sp|P68363|TBA1B_HUMAN; sp|Q71U36|TBA1A_HUMAN; sp|Q9BQE3|TBA1C_HUMAN,I,H,F,P,L,A,T,Y,A,P,V,I,S,A,E,,,,IHFPLATYAPVISAE,IHFPLATYAPVISAE, +,,sp|Q9H8H2|DDX31_HUMAN,,,,S,D,G,P,Y,A,L,V,L,V,P,T,,,,SDGPYALVLVPT,IQRSDGPYALVLVPT, +,,sp|O75306|NDUS2_HUMAN,,T,Q,P,Y,D,V,Y,D,Q,V,E,F,D,V,,,,TQPYDVYDQVEFDV,KTQPYDVYDQVEFDV, +,,sp|O60506|HNRPQ_HUMAN,,,,,L,K,D,Y,A,F,I,H,F,D,E,,,,LKDYAFIHFDE,RVKKLKDYAFIHFDE, +,,sp|P10253|LYAG_HUMAN,,,,,,G,A,Y,T,Q,V,I,F,L,A,,,,GAYTQVIFLA,EVLERGAYTQVIFLA, +,,sp|O60506|HNRPQ_HUMAN,,,,,,,D,Y,A,F,I,H,F,D,E,,,,DYAFIHFDE,RVKKLKDYAFIHFDE, +,,sp|P04406|G3P_HUMAN,W,G,D,A,G,A,E,Y,V,V,E,S,T,G,V,,,,WGDAGAEYVVESTGV,WGDAGAEYVVESTGV, +,,sp|P30086|PEBP1_HUMAN,,,,,,,,Y,V,W,L,V,Y,E,Q,,,,YVWLVYEQ,KGTGLHRYVWLVYEQ, +,,sp|Q9UHA4|LTOR3_HUMAN,I,I,C,Y,Y,N,T,Y,Q,V,V,Q,F,N,R,,,,IICYYNTYQVVQFNR,IICYYNTYQVVQFNR, +,,sp|P23528|COF1_HUMAN,,,,,,M,I,Y,A,S,S,K,,,,,,,MIYASSK,PLKSKMIYASSKDAI, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,,,Q,E,Y,D,E,S,G,P,S,I,,,,QEYDESGPSI,MWISKQEYDESGPSI, +,,sp|P25705|ATPA_HUMAN,,,H,A,L,I,I,Y,D,D,L,S,K,,,,,,HALIIYDDLSK,GKHALIIYDDLSKQA, +,,sp|Q14204|DYHC1_HUMAN,P,N,Y,I,V,P,D,Y,M,P,V,V,Y,D,K,,,,PNYIVPDYMPVVYDK,PNYIVPDYMPVVYDK, +,,sp|Q9NR30|DDX21_HUMAN,,,,,,E,E,Y,Q,L,V,Q,V,E,Q,,,,EEYQLVQVEQ,FYQHKEEYQLVQVEQ, +,,sp|P34932|HSP74_HUMAN,N,A,V,E,E,Y,V,Y,E,M,R,,,,,,,,NAVEEYVYEMR,NAVEEYVYEMRDKLS, +,,sp|Q96JH7|VCIP1_HUMAN,,,,S,S,G,D,Y,S,A,T,F,L,P,G,,,,SSGDYSATFLPG,GMRSSGDYSATFLPG, +,,sp|P04406|G3P_HUMAN,W,Y,D,N,E,F,G,Y,S,N,R,,,,,,,,WYDNEFGYSNR,WYDNEFGYSNRVVDL, +,,sp|P53396|ACLY_HUMAN,,,,,E,G,D,Y,V,L,F,H,H,E,G,,,,EGDYVLFHHEG,YATREGDYVLFHHEG, +,,sp|Q9H299|SH3L3_HUMAN,,,,,,I,Q,Y,Q,L,V,D,I,S,Q,,,,IQYQLVDISQ,LDGKRIQYQLVDISQ, +,,sp|Q01780|EXOSX_HUMAN,,,,D,D,T,H,Y,L,L,Y,I,Y,D,K,,,,DDTHYLLYIYDK,YARDDTHYLLYIYDK, +,,sp|P08238|HS90B_HUMAN,,,,,,S,I,Y,Y,I,T,G,E,S,K,,,,SIYYITGESK,KETQKSIYYITGESK, +,,sp|Q08211|DHX9_HUMAN,,,,D,F,V,N,Y,L,V,R,,,,,,,,DFVNYLVR,AARDFVNYLVRINEI, +,,sp|P67775|PP2AA_HUMAN; sp|P62714|PP2AB_HUMAN,,,S,P,D,T,N,Y,L,F,M,G,D,Y,V,,,,SPDTNYLFMGDYV,GKSPDTNYLFMGDYV, +,,sp|P54105|ICLN_HUMAN,D,C,L,G,E,H,L,Y,V,M,V,N,A,K,,,,,DCLGEHLYVMVNAK,DCLGEHLYVMVNAKF, +,,sp|Q9UKJ3|GPTC8_HUMAN,H,Q,K,S,P,S,Q,Y,S,E,E,E,E,E,E,,,,HQKSPSQYSEEEEEE,HQKSPSQYSEEEEEE, +,,sp|P07900|HS90A_HUMAN,,,,,,,F,Y,E,Q,F,S,K,,,,,,FYEQFSK,KENYKKFYEQFSKNI, +,,sp|P07437|TBB5_HUMAN; sp|P68371|TBB4B_HUMAN,,,,,,G,H,Y,T,E,G,A,E,L,V,,,,GHYTEGAELV,NNWAKGHYTEGAELV, +,,sp|P18124|RL7_HUMAN,,,,I,V,E,P,Y,I,A,W,G,Y,P,N,,,,IVEPYIAWGYPN,MLRIVEPYIAWGYPN, +,,sp|Q16778|H2B2E_HUMAN; sp|P33778|H2B1B_HUMAN; sp|P23527|H2B1O_HUMAN; sp|P06899|H2B1J_HUMAN; sp|Q8N257|H2B3B_HUMAN; sp|Q6DRA6|H2B2D_HUMAN; sp|Q6DN03|H2B2C_HUMAN,,,E,S,Y,S,I,Y,V,Y,K,,,,,,,,ESYSIYVYK,RKESYSIYVYKVLKQ,RKESYSIYVYKVLKR +,,sp|Q9BWF3|RBM4_HUMAN; sp|Q9BQ04|RBM4B_HUMAN,,,,,,,N,Y,G,F,V,H,I,E,D,,,,NYGFVHIED,ECDIIKNYGFVHIED, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,T,V,P,I,Y,E,G,Y,A,L,P,H,,,,,,,TVPIYEGYALPH,TVPIYEGYALPHAIL, +,,sp|P42167|LAP2B_HUMAN; sp|P42166|LAP2A_HUMAN,,,,,,D,V,Y,V,Q,L,Y,L,Q,H,,,,DVYVQLYLQH,GEQRKDVYVQLYLQH, +,,sp|P24752|THIL_HUMAN,,,N,E,Q,D,A,Y,A,I,N,S,Y,T,R,,,,NEQDAYAINSYTR,ARNEQDAYAINSYTR, +,,sp|P62750|RL23A_HUMAN,,,,L,A,P,D,Y,D,A,L,D,V,A,N,,,,LAPDYDALDVAN,YVRLAPDYDALDVAN, +,,sp|Q969V3|NCLN_HUMAN,,,,T,H,A,A,Y,N,L,L,F,F,A,S,,,,THAAYNLLFFAS,YKRTHAAYNLLFFAS, +,,sp|Q15155|NOMO1_HUMAN; sp|P69849|NOMO3_HUMAN; sp|Q5JPE7|NOMO2_HUMAN,,S,D,V,E,I,N,Y,S,L,I,E,I,K,,,,,SDVEINYSLIEIK,KSDVEINYSLIEIKL, +,,sp|P06733|ENOA_HUMAN,S,G,A,S,T,G,I,Y,E,A,L,E,L,R,,,,,SGASTGIYEALELR,SGASTGIYEALELRD, +,,sp|P63173|RL38_HUMAN,,,,,,Y,L,Y,T,L,V,I,T,D,K,,,,YLYTLVITDK,VRCSRYLYTLVITDK, +,,sp|Q9Y5S9|RBM8A_HUMAN,,,,,,,G,Y,T,L,V,E,Y,E,T,,,,GYTLVEYET,RTGYLKGYTLVEYET, +,,sp|Q07666|KHDR1_HUMAN,,,D,D,E,E,N,Y,L,D,L,F,S,H,K,,,,DDEENYLDLFSHK,KKDDEENYLDLFSHK, +,,sp|P63010|AP2B1_HUMAN,,,,,D,S,D,Y,Y,N,M,L,L,K,K,,,,DSDYYNMLLKK,LLPKDSDYYNMLLKK, +,,sp|P78406|RAE1L_HUMAN,,,,,A,P,N,Y,S,C,V,M,T,G,S,,,,APNYSCVMTGS,HWIKAPNYSCVMTGS, +,,sp|P78527|PRKDC_HUMAN,,,H,D,V,G,A,Y,M,L,M,Y,K,,,,,,HDVGAYMLMYK,GKHDVGAYMLMYKGA, +,,sp|Q4VC31|CCD58_HUMAN,,,,,,Q,L,Y,E,S,L,M,A,A,H,,,,QLYESLMAAH,SQTCKQLYESLMAAH, +,,sp|P06733|ENOA_HUMAN,,,I,G,A,E,V,Y,H,N,L,K,,,,,,,IGAEVYHNLK,MRIGAEVYHNLKNVI, +,,sp|P11021|BIP_HUMAN,,,,,T,K,P,Y,I,Q,V,D,I,G,G,,,,TKPYIQVDIGG,VEKKTKPYIQVDIGG, +,,sp|Q16881|TRXR1_HUMAN,,,,,,,S,Y,D,Y,D,L,I,I,I,,,,SYDYDLIII,PEDLPKSYDYDLIII, +,,sp|O15144|ARPC2_HUMAN,,,,,,,D,Y,L,H,Y,H,I,K,,,,,DYLHYHIK,LIHTFRDYLHYHIKC, +,,sp|Q15084|PDIA6_HUMAN,,,,,,N,S,Y,L,E,V,L,L,K,,,,,NSYLEVLLK,GAAGRNSYLEVLLKL, +,,sp|Q9UKV8|AGO2_HUMAN,,,,,,N,L,Y,T,A,M,P,L,P,I,,,,NLYTAMPLPI,FDGRKNLYTAMPLPI, +,,sp|Q9Y2X3|NOP58_HUMAN,,,,,T,Q,L,Y,E,Y,L,Q,N,R,,,,,TQLYEYLQNR,SEYRTQLYEYLQNRM, +,,sp|Q14152|EIF3A_HUMAN,L,Q,Q,V,S,Q,I,Y,Q,S,I,E,F,S,R,,,,LQQVSQIYQSIEFSR,LQQVSQIYQSIEFSR, +,,sp|P00338|LDHA_HUMAN,,,,D,Q,L,I,Y,N,L,L,K,,,,,,,DQLIYNLLK,TLKDQLIYNLLKEEQ, +,,sp|Q14697|GANAB_HUMAN,H,H,G,P,Q,T,L,Y,L,P,V,T,L,S,S,,,,HHGPQTLYLPVTLSS,HHGPQTLYLPVTLSS, +,,sp|P31483|TIA1_HUMAN,,,,,,,G,Y,G,F,V,S,F,F,N,,,,GYGFVSFFN,ATGKSKGYGFVSFFN, +,,sp|P22061|PIMT_HUMAN,G,Y,A,E,E,A,P,Y,D,A,I,H,V,G,A,,,,GYAEEAPYDAIHVGA,GYAEEAPYDAIHVGA, +,,sp|O75503|CLN5_HUMAN,,,,,,I,T,Y,E,E,I,P,L,P,I,,,,ITYEEIPLPI,FPFIKITYEEIPLPI, +,,sp|P19338|NUCL_HUMAN,,,,,G,I,A,Y,I,E,F,K,,,,,,,GIAYIEFK,GKSKGIAYIEFKTEA, +,,sp|P61604|CH10_HUMAN,V,V,L,D,D,K,D,Y,F,L,F,R,,,,,,,VVLDDKDYFLFR,VVLDDKDYFLFRDGD, +,,sp|Q9Y617|SERC_HUMAN,,,,S,Q,T,I,Y,E,I,I,D,N,S,Q,,,,SQTIYEIIDNSQ,SIKSQTIYEIIDNSQ, +,,sp|P23528|COF1_HUMAN,H,E,L,Q,A,N,C,Y,E,E,V,K,D,R,,,,,HELQANCYEEVKDR,HELQANCYEEVKDRC, +,,sp|Q13347|EIF3I_HUMAN,S,A,A,L,S,P,N,Y,D,H,V,V,L,G,G,,,,SAALSPNYDHVVLGG,SAALSPNYDHVVLGG, +,,sp|P60709|ACTB_HUMAN; sp|P63261|ACTG_HUMAN,,,,D,L,T,D,Y,L,M,K,,,,,,,,DLTDYLMK,AGRDLTDYLMKILTE, +,,sp|P62273|RS29_HUMAN,,,G,H,Q,Q,L,Y,W,S,H,P,R,,,,,,GHQQLYWSHPR,MGHQQLYWSHPRKF, +,,sp|P00338|LDHA_HUMAN,,Q,V,V,E,S,A,Y,E,V,I,K,,,,,,,QVVESAYEVIK,KQVVESAYEVIKLKG, +,,sp|P53396|ACLY_HUMAN,,,T,T,D,G,V,Y,E,G,V,A,I,G,G,,,,TTDGVYEGVAIGG,SRTTDGVYEGVAIGG, +,,sp|P63010|AP2B1_HUMAN,,,,,D,S,D,Y,Y,N,M,L,L,K,,,,,DSDYYNMLLK,LLPKDSDYYNMLLKK, +,,sp|Q9NQ50|RM40_HUMAN,,,,,,,V,Y,T,Q,V,E,F,K,,,,,VYTQVEFK,YNDITKVYTQVEFKR, +,,sp|P31943|HNRH1_HUMAN; sp|P52597|HNRPF_HUMAN,,A,T,E,N,D,I,Y,N,F,F,S,P,L,N,,,,ATENDIYNFFSPLN,RATENDIYNFFSPLN,KATENDIYNFFSPLN +,,sp|P62269|RS18_HUMAN,,,,,,,,Y,A,H,V,V,L,R,,,,,YAHVVLR,IKGVGRRYAHVVLRK, +,,sp|Q92769|HDAC2_HUMAN,,,,,,,,Y,Y,A,V,N,F,P,M,,,,YYAVNFPM,IGAGKGKYYAVNFPM, +,,sp|P62249|RS16_HUMAN,G,G,H,V,A,Q,I,Y,A,I,R,,,,,,,,GGHVAQIYAIR,GGHVAQIYAIRQSIS, +,,sp|Q99880|H2B1L_HUMAN; sp|Q99879|H2B1M_HUMAN; sp|Q99877|H2B1N_HUMAN; sp|Q93079|H2B1H_HUMAN; sp|Q5QNW6|H2B2F_HUMAN; sp|P62807|H2B1C_HUMAN; sp|P58876|H2B1D_HUMAN; sp|O60814|H2B1K_HUMAN; sp|P57053|H2BFS_HUMAN,,K,E,S,Y,S,V,Y,V,Y,K,,,,,,,,KESYSVYVYK,RKESYSVYVYKVLKQ, +,,sp|O75306|NDUS2_HUMAN,,,,,T,Q,P,Y,D,V,Y,D,Q,V,E,,,,TQPYDVYDQVE,DLRKTQPYDVYDQVE, +,,sp|P09211|GSTP1_HUMAN; sp|GSTP1_HUMAN,,P,P,Y,T,V,V,Y,F,P,V,R,,,,,,,PPYTVVYFPVR,MPPYTVVYFPVRGRC,PPYTVVYFPVRGRC +,,sp|P62847|RS24_HUMAN,T,T,G,F,G,M,I,Y,D,S,L,D,Y,A,K,,,,TTGFGMIYDSLDYAK,TTGFGMIYDSLDYAK, +,,sp|Q14566|MCM6_HUMAN,,,,,,D,F,Y,V,A,F,Q,D,L,P,,,,DFYVAFQDLP,IPLAKDFYVAFQDLP, +,,sp|Q13595|TRA2A_HUMAN; sp|P62995|TRA2B_HUMAN,R,R,S,P,S,P,Y,Y,S,R,,,,,,,,,RRSPSPYYSR,RRSPSPYYSRYRSRS,RRSPSPYYSRGGYRS +,,sp|P51858|HDGF_HUMAN,,,,,,,,Y,Q,V,F,F,F,G,T,,,,YQVFFFGT,VKSTANKYQVFFFGT, +,,sp|Q96PE3|INP4A_HUMAN,D,G,G,S,D,Q,N,Y,D,I,V,T,I,G,A,,,,DGGSDQNYDIVTIGA,DGGSDQNYDIVTIGA, +,,sp|P24928|RPB1_HUMAN,,,,,,E,L,Y,H,V,I,S,F,D,G,,,,ELYHVISFDG,KALERELYHVISFDG, +,,sp|P14618|KPYM_HUMAN,,E,A,E,A,A,I,Y,H,L,Q,L,F,E,E,,,,EAEAAIYHLQLFEE,REAEAAIYHLQLFEE, +,,sp|Q9BSJ8|ESYT1_HUMAN,,,,H,L,S,P,Y,A,T,L,T,V,G,D,,,,HLSPYATLTVGD,GTKHLSPYATLTVGD, +,,sp|Q92769|HDAC2_HUMAN,,,,,,,Y,Y,A,V,N,F,P,M,R,,,,YYAVNFPMR,GAGKGKYYAVNFPMR, +,,sp|P09211|GSTP1_HUMAN; sp|GSTP1_HUMAN,,,,,,P,P,Y,T,V,V,Y,F,P,V,,,,PPYTVVYFPV,MPPYTVVYFPV,PPYTVVYFPV +,,sp|O43390|HNRPR_HUMAN,,,,,,,G,Y,A,F,I,T,F,C,G,,,,GYAFITFCG,LSGQNRGYAFITFCG, +,,sp|Q92835|SHIP1_HUMAN,,,,,N,Q,N,Y,M,N,I,L,R,,,,,,NQNYMNILR,KLRRNQNYMNILRFL, +,,sp|P60174|TPIS_HUMAN,,,,V,V,L,A,Y,E,P,V,W,A,I,G,,,,VVLAYEPVWAIG,WSKVVLAYEPVWAIG, +,,sp|Q9UKK9|NUDT5_HUMAN,,,,,T,L,H,Y,E,C,I,V,L,V,K,,,,TLHYECIVLVK,VLQRTLHYECIVLVK, +,,sp|Q9Y277|VDAC3_HUMAN,,,,,V,C,N,Y,G,L,T,F,T,Q,K,,,,VCNYGLTFTQK,TKYKVCNYGLTFTQK, +,,sp|P50395|GDIB_HUMAN,D,Y,L,D,Q,P,C,Y,E,T,I,N,R,,,,,,DYLDQPCYETINR,DYLDQPCYETINRIK, +,,sp|P13796|PLSL_HUMAN,S,Y,S,E,E,E,K,Y,A,F,V,N,W,I,N,,,,SYSEEEKYAFVNWIN,SYSEEEKYAFVNWIN, +,,sp|P62805|H4_HUMAN,,,,D,A,V,T,Y,T,E,H,A,K,,,,,,DAVTYTEHAK,VIRDAVTYTEHAKRK, +,,sp|P60842|IF4A1_HUMAN; sp|P38919|IF4A3_HUMAN,,,,,,G,I,Y,A,Y,G,F,E,K,P,,,,GIYAYGFEKP,ESLLRGIYAYGFEKP,EDLLRGIYAYGFEKP +,,sp|P0DP24|CALM2_HUMAN,F,D,K,D,G,N,G,Y,I,S,A,A,E,L,R,,,,FDKDGNGYISAAELR,FDKDGNGYISAAELR, +,,sp|E9PAV3|NACAM_HUMAN; sp|Q13765|NACA_HUMAN,,S,P,A,S,D,T,Y,I,V,F,G,E,A,K,,,,SPASDTYIVFGEAK,KSPASDTYIVFGEAK, +,,sp|Q06830|PRDX1_HUMAN,,,T,I,A,Q,D,Y,G,V,L,K,,,,,,,TIAQDYGVLK,KRTIAQDYGVLKADE, +,,sp|Q99497|PARK7_HUMAN,,,,,E,G,P,Y,D,V,V,V,L,P,G,,,,EGPYDVVVLPG,DAKKEGPYDVVVLPG, +,,sp|Q969T4|UB2E3_HUMAN,,,,G,D,N,I,Y,E,W,R,,,,,,,,GDNIYEWR,GPKGDNIYEWRSTIL, +,,sp|Q92841|DDX17_HUMAN,,,,,G,T,A,Y,T,F,F,T,P,G,N,,,,GTAYTFFTPGN,STNKGTAYTFFTPGN, +,,sp|P84098|RL19_HUMAN,,,,,,H,M,Y,H,S,L,Y,L,K,,,,,HMYHSLYLK,KKIDRHMYHSLYLKV, +,,sp|Q92544|TM9S4_HUMAN,,T,Q,L,P,Y,E,Y,Y,S,L,P,F,C,Q,,,,TQLPYEYYSLPFCQ,RTQLPYEYYSLPFCQ, +,,sp|P11940|PABP1_HUMAN,,,,,S,L,G,Y,A,Y,V,N,F,Q,Q,,,,SLGYAYVNFQQ,ITRRSLGYAYVNFQQ, +,,sp|Q07020|RL18_HUMAN,,,,S,Q,D,I,Y,L,R,,,,,,,,,SQDIYLR,EPKSQDIYLRLLVKL, +,,sp|P26641|EF1G_HUMAN,,,A,A,G,T,L,Y,T,Y,P,E,N,W,R,,,,AAGTLYTYPENWR,MAAGTLYTYPENWR, +,,sp|P62906|RL10A_HUMAN,,,,,D,T,L,Y,E,A,V,R,,,,,,,DTLYEAVR,KVSRDTLYEAVREVL, +,,sp|Q13242|SRSF9_HUMAN,,,,G,S,P,H,Y,F,S,P,F,R,P,Y,,,,GSPHYFSPFRPY,QSRGSPHYFSPFRPY, +,,sp|O75165|DJC13_HUMAN,M,M,S,I,D,D,A,Y,E,V,L,N,L,P,Q,,,,MMSIDDAYEVLNLPQ,MMSIDDAYEVLNLPQ, +,,sp|Q9HC35|EMAL4_HUMAN,I,I,N,Q,E,G,E,Y,I,K,M,F,M,R,,,,,IINQEGEYIKMFMR,IINQEGEYIKMFMRG, +,,sp|O00571|DDX3X_HUMAN; sp|O15523|DDX3Y_HUMAN,,,,D,K,D,A,Y,S,S,F,G,S,R,,,,,DKDAYSSFGSR,SSKDKDAYSSFGSRS,CSKDKDAYSSFGSRD +,,sp|P04040|CATA_HUMAN; sp|CATA_HUMAN,,,,L,G,P,N,Y,L,H,I,P,V,N,C,,,,LGPNYLHIPVNC,RHRLGPNYLHIPVNC, +,,sp|P08238|HS90B_HUMAN,E,M,T,S,L,S,E,Y,V,S,R,,,,,,,,EMTSLSEYVSR,EMTSLSEYVSRMKET, +,,sp|P42224|STAT1_HUMAN,,,,,S,Q,W,Y,E,L,Q,Q,L,D,S,,,,SQWYELQQLDS,MSQWYELQQLDS, +,,sp|P19338|NUCL_HUMAN,,,,S,I,S,L,Y,Y,T,G,E,K,,,,,,SISLYYTGEK,DGRSISLYYTGEKGQ, +,,sp|P78527|PRKDC_HUMAN,,,,,,,F,Y,Q,G,F,L,F,S,E,,,,FYQGFLFSE,VFNELKFYQGFLFSE, +,,sp|Q08211|DHX9_HUMAN,A,H,N,N,M,T,N,Y,A,T,V,W,A,S,K,,,,AHNNMTNYATVWASK,AHNNMTNYATVWASK, +,,sp|O60841|IF2P_HUMAN,,,T,S,E,V,P,Y,A,G,I,N,I,G,P,,,,TSEVPYAGINIGP,LKTSEVPYAGINIGP, +,,sp|P63244|RACK1_HUMAN,,,,D,E,T,N,Y,G,I,P,Q,R,,,,,,DETNYGIPQR,LTRDETNYGIPQRAL, +,,sp|Q99880|H2B1L_HUMAN; sp|Q99879|H2B1M_HUMAN; sp|Q99877|H2B1N_HUMAN; sp|Q93079|H2B1H_HUMAN; sp|Q5QNW6|H2B2F_HUMAN; sp|P62807|H2B1C_HUMAN; sp|P58876|H2B1D_HUMAN; sp|O60814|H2B1K_HUMAN; sp|P57053|H2BFS_HUMAN,,,E,S,Y,S,V,Y,V,Y,K,,,,,,,,ESYSVYVYK,RKESYSVYVYKVLKQ, +,,sp|P62263|RS14_HUMAN,D,R,D,E,S,S,P,Y,A,A,M,L,A,A,Q,,,,DRDESSPYAAMLAAQ,DRDESSPYAAMLAAQ, +,,sp|Q99497|PARK7_HUMAN,,,,K,E,G,P,Y,D,V,V,V,L,P,G,,,,KEGPYDVVVLPG,DAKKEGPYDVVVLPG, +,,sp|P42704|LPPRC_HUMAN,,,,,,A,L,Y,E,H,L,T,A,K,,,,,ALYEHLTAK,VTSAKALYEHLTAKN,