Mercurial > repos > jeremyjliu > region_motif_enrichment
changeset 33:9525574f700f draft
Uploaded
| author | jeremyjliu |
|---|---|
| date | Tue, 10 Feb 2015 01:02:56 -0500 |
| parents | 5101c1616be0 |
| children | fe8a884363df |
| files | motif_databases.loc.sample region_motif_compare.r |
| diffstat | 2 files changed, 10 insertions(+), 1 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/motif_databases.loc.sample Tue Feb 10 01:02:56 2015 -0500 @@ -0,0 +1,9 @@ +# This file lists the locations and values of all the motif databases bgz +# and tbi files. This file has the format (white space characters are TAB +# characters) +# <value> <display_name> <file_path> +# +# So, motif_databases.loc could look something like this: +# +# test_bgz Test Pouya Subset (hg19) BGZ /<path_to_galaxy>/tool-data/motifs/pouya_test_motifs.bed.bgz +# test_tbi Test Pouya Subset (hg19) TBI /<path_to_galaxy>/tool-data/motifs/pouya_test_motifs.bed.bgz.tbi
--- a/region_motif_compare.r Tue Feb 10 00:53:52 2015 -0500 +++ b/region_motif_compare.r Tue Feb 10 01:02:56 2015 -0500 @@ -32,7 +32,7 @@ pwmFile = concat(workingDir, "/pwms/jaspar.jolma.pwms.from.seq.RData") } else if (dbCode == "m") { pwmFile = concat(workingDir, "/pwms/mm9.pwms.from.seq.RData") -} else if (dbCode == "c") { # rest of dbCode "c" implemeted when pwmFile loaded +} else if (dbCode == "c") { # rest of dbCode "c" implemented when pwmFile loaded pwmFile = concat(workingDir, "/pwms/pouya.pwms.from.seq.RData") pwmFile2 = concat(workingDir, "/pwms/jaspar.jolma.pwms.from.seq.RData") } else {