# HG changeset patch
# User jeremyjliu
# Date 1423548176 18000
# Node ID 9525574f700f0579f93d3a001935459ab0820253
# Parent  5101c1616be0d0b224f698d11836b039b6160d00
Uploaded

diff -r 5101c1616be0 -r 9525574f700f motif_databases.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/motif_databases.loc.sample	Tue Feb 10 01:02:56 2015 -0500
@@ -0,0 +1,9 @@
+# This file lists the locations and values of all the motif databases bgz
+# and tbi files. This file has the format (white space characters are TAB
+# characters)
+# <value>       <display_name>  <file_path>
+#
+# So, motif_databases.loc could look something like this:
+#
+# test_bgz    Test Pouya Subset (hg19) BGZ    /<path_to_galaxy>/tool-data/motifs/pouya_test_motifs.bed.bgz
+# test_tbi    Test Pouya Subset (hg19) TBI    /<path_to_galaxy>/tool-data/motifs/pouya_test_motifs.bed.bgz.tbi
diff -r 5101c1616be0 -r 9525574f700f region_motif_compare.r
--- a/region_motif_compare.r	Tue Feb 10 00:53:52 2015 -0500
+++ b/region_motif_compare.r	Tue Feb 10 01:02:56 2015 -0500
@@ -32,7 +32,7 @@
 	pwmFile = concat(workingDir, "/pwms/jaspar.jolma.pwms.from.seq.RData")
 } else if (dbCode == "m") {
 	pwmFile = concat(workingDir, "/pwms/mm9.pwms.from.seq.RData")
-} else if (dbCode == "c") { # rest of dbCode "c" implemeted when pwmFile loaded
+} else if (dbCode == "c") { # rest of dbCode "c" implemented when pwmFile loaded
 	pwmFile = concat(workingDir, "/pwms/pouya.pwms.from.seq.RData")
 	pwmFile2 = concat(workingDir, "/pwms/jaspar.jolma.pwms.from.seq.RData")
 } else {