Mercurial > repos > jeremyjliu > region_motif_enrichment

diff region_motif_intersect.xml @ 12:ef85d5e787d7 draft

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Corrected to \$R_SCRIPT_PATH
author jeremyjliu
date Fri, 07 Nov 2014 12:37:44 -0500
parents 0c1627c2f09d
children
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line diff
--- a/region_motif_intersect.xml	Fri Nov 07 12:21:54 2014 -0500
+++ b/region_motif_intersect.xml	Fri Nov 07 12:37:44 2014 -0500
@@ -2,10 +2,9 @@
   <description>for computing the motifs that lie inside a region set</description>
   <requirements>
     <requirement type="set_environment">R_SCRIPT_PATH</requirement>
-    <requirement type="package" version="2.15.1">R</requirement>
   </requirements>
   <command interpreter="Rscript">
-    region_motif_intersect.r --args $R_SCRIPT_PATH $db_type $in_bed $out_tab
+    region_motif_intersect.r --args \$R_SCRIPT_PATH $db_type $in_bed $out_tab
   </command>
   <inputs>
     <param name="in_bed" type="data" format="bed" label="Input BED File" />