Mercurial > repos > jeremyjliu > region_motif_enrichment
comparison region_motif_intersect.xml @ 12:ef85d5e787d7 draft
Corrected to \$R_SCRIPT_PATH
| author | jeremyjliu |
|---|---|
| date | Fri, 07 Nov 2014 12:37:44 -0500 |
| parents | 0c1627c2f09d |
| children |
comparison
equal
deleted
inserted
replaced
| 11:72d91953d77f | 12:ef85d5e787d7 |
|---|---|
| 1 <tool id="region_motif_intersect" name="Region Motif Intersect"> | 1 <tool id="region_motif_intersect" name="Region Motif Intersect"> |
| 2 <description>for computing the motifs that lie inside a region set</description> | 2 <description>for computing the motifs that lie inside a region set</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="set_environment">R_SCRIPT_PATH</requirement> | 4 <requirement type="set_environment">R_SCRIPT_PATH</requirement> |
| 5 <requirement type="package" version="2.15.1">R</requirement> | |
| 6 </requirements> | 5 </requirements> |
| 7 <command interpreter="Rscript"> | 6 <command interpreter="Rscript"> |
| 8 region_motif_intersect.r --args $R_SCRIPT_PATH $db_type $in_bed $out_tab | 7 region_motif_intersect.r --args \$R_SCRIPT_PATH $db_type $in_bed $out_tab |
| 9 </command> | 8 </command> |
| 10 <inputs> | 9 <inputs> |
| 11 <param name="in_bed" type="data" format="bed" label="Input BED File" /> | 10 <param name="in_bed" type="data" format="bed" label="Input BED File" /> |
| 12 <param name="db_type" type="select" label="Select Motif Database" > | 11 <param name="db_type" type="select" label="Select Motif Database" > |
| 13 <option value="t">Test Pouya Subset (hg19)</option> | 12 <option value="t">Test Pouya Subset (hg19)</option> |