Mercurial > repos > jeremyjliu > region_motif_data_manager

changeset 12:377723319b45 draft default tip

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author jeremyjliu
date Tue, 07 Apr 2015 23:53:02 -0400
parents 24a2c2783fb8
children
files data_manager/data_manager_fetch_motifs.py
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_fetch_motifs.py	Tue Apr 07 23:19:04 2015 -0400
+++ b/data_manager/data_manager_fetch_motifs.py	Tue Apr 07 23:53:02 2015 -0400
@@ -29,28 +29,28 @@
         TBI = ['http://compbio.med.harvard.edu/motif-enrichment/pouya_motifs.bed.bgz.tbi',
                 "pouya_motifs.bed.bgz.tbi", "encode_tbi", "Encode Motifs (hg19) TBI"]
         PWM = ['http://compbio.med.harvard.edu/motif-enrichment/pwms/pouya.pwms.from.seq.meme.txt',
-                "pouya.pwms.from.seq.RData", "encode_pwm", "Encode Motifs (hg19) PWM MEME"]        
+                "pouya.pwms.from.seq.meme.txt", "encode_pwm", "Encode Motifs (hg19) PWM MEME"]        
     elif motif_db == "jaspar":
         BGZ = ['http://compbio.med.harvard.edu/motif-enrichment/jaspar_jolma_motifs.bed.bgz',
                 "jaspar_jolma_motifs.bed.bgz", "jaspar_bgz", "Jaspar and Jolma Motifs (hg19) BGZ"]
         TBI = ['http://compbio.med.harvard.edu/motif-enrichment/jaspar_jolma_motifs.bed.bgz.tbi',
                 "jaspar_jolma_motifs.bed.bgz.tbi", "jaspar_tbi", "Jaspar and Jolma Motifs (hg19) TBI"]
         PWM = ['http://compbio.med.harvard.edu/motif-enrichment/pwms/jaspar.jolma.pwms.from.seq.meme.txt',
-                "jaspar.jolma.pwms.from.seq.RData", "jaspar_pwm", "Jaspar and Jolma Motifs (hg19) PWM MEME"]
+                "jaspar.jolma.pwms.from.seq.meme.txt", "jaspar_pwm", "Jaspar and Jolma Motifs (hg19) PWM MEME"]
     elif motif_db == "mouse":
         BGZ = ['http://compbio.med.harvard.edu/motif-enrichment/mm9_motifs_split.bed.bgz',
                 "mm9_motifs_split.bed.bgz", "mouse_bgz", "Mouse Motifs (mm9) BGZ"]
         TBI = ['http://compbio.med.harvard.edu/motif-enrichment/mm9_motifs_split.bed.bgz.tbi',
                 "mm9_motifs_split.bed.bgz.tbi", "mouse_tbi", "Mouse Motifs (mm9) TBI"]
         PWM = ['http://compbio.med.harvard.edu/motif-enrichment/pwms/mm9.pwms.from.seq.meme.txt',
-                "mm9.pwms.from.seq.RData", "mouse_pwm", "Mouse Motifs (mm9) PWM MEME"]
+                "mm9.pwms.from.seq.meme.txt", "mouse_pwm", "Mouse Motifs (mm9) PWM MEME"]
     else:
         BGZ = ['http://compbio.med.harvard.edu/motif-enrichment/pouya_test_motifs.bed.bgz', 
                "pouya_test_motifs.bed.bgz", "test_bgz", "Test Encode Motifs (hg19) BGZ"]
         TBI = ['http://compbio.med.harvard.edu/motif-enrichment/pouya_test_motifs.bed.bgz.tbi',
                "pouya_test_motifs.bed.bgz.tbi", "test_tbi", "Test Encode Motifs (hg19) TBI"]
         PWM = ['http://compbio.med.harvard.edu/motif-enrichment/pwms/pouya.pwms.from.seq.meme.txt',
-                "pouya.pwms.from.seq.RData", "test_pwm", "Test Encode Motifs (hg19) PWM MEME"] 
+                "pouya.pwms.from.seq.meme.txt", "test_pwm", "Test Encode Motifs (hg19) PWM MEME"] 
 
 
     # Save and add motif bgz file to motif_databases data table