Mercurial > repos > jeremie > package_pindel_0_2_5a4

changeset 5:04a20abab8c2 draft default tip

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Uploaded
author jeremie
date Tue, 01 Jul 2014 09:30:54 -0400
parents e1f5cb956f17
children
files tool_dependencies.xml
diffstat 1 files changed, 6 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Jul 01 09:25:50 2014 -0400
+++ b/tool_dependencies.xml	Tue Jul 01 09:30:54 2014 -0400
@@ -7,17 +7,17 @@
 		<install version="1.0">
 			<actions>
 				<action type="shell_command">git clone https://github.com/genome/pindel.git</action>
-<!-- 				<action type="shell_command">
-					echo "$samtools
-					samtools
-					$PATH
-					$INSTALL_DIR"
-				</action> -->
 				<action type="set_environment_for_install">
                     <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu">
                         <package name="samtools" version="0.1.18" />
                    </repository>
                 </action>
+                <action type="shell_command">
+					echo "$samtools
+					$PATH
+					$INSTALL_DIR
+					$BAM_ROOT"
+				</action>
 				<!-- <action type="shell_command">ls</action> -->
 				<!-- <action type="move_directory_files">
 					<source_directory>.</source_directory>