Mercurial > repos > jeremie > package_cnvnator_0_3

changeset 0:abef9efa66e8 draft default tip

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Uploaded
author jeremie
date Mon, 07 Jul 2014 11:05:13 -0400
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files tool_dependencies.xml
diffstat 1 files changed, 29 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Jul 07 11:05:13 2014 -0400
@@ -0,0 +1,29 @@
+<?xml version="1.0"?>
+<tool_dependency>
+	<package name="cnvnator" version="0.3">
+		<install version="1.0">
+			<actions>
+				<!-- root dependency -->
+				<action type="download_by_url">http://sv.gersteinlab.org/cnvnator/CNVnator_v0.3.zip</action>
+				<action type="change_directory">src/samtools</action>
+				<action type="shell_command">make</action>
+				<action type="change_directory">..</action>
+				<action type="shell_command">make</action>
+				<action type="move_file">
+					<source>cnvnator</source>
+					<destination>$INSTALL_DIR/bin</destination>
+				</action>
+				<action type="move_file">
+					<source>../cnvnator2VCF.pl</source>
+					<destination>$INSTALL_DIR/bin</destination>
+				</action>
+				<action type="set_environment">
+					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+				</action>
+			</actions>
+		</install>
+		<readme>
+		</readme>
+	</package>
+</tool_dependency>
+