Mercurial > repos > jeremie > package_breakdancer_1_2_6
changeset 20:f732b9eebb6d draft
Uploaded
| author | jeremie |
|---|---|
| date | Thu, 26 Jun 2014 10:40:54 -0400 |
| parents | c4dedf91da30 |
| children | dc22a4b50fa7 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Jun 26 10:34:16 2014 -0400 +++ b/tool_dependencies.xml Thu Jun 26 10:40:54 2014 -0400 @@ -3,15 +3,16 @@ <package name="breakdancer-max" version="1.2.6"> <install version="1.0"> <actions> - <action type="shell_command">wget https://www.dropbox.com/s/uu6i5m6ri32ogo9/breakdancer-max</action> +<!-- <action type="shell_command">wget https://www.dropbox.com/s/uu6i5m6ri32ogo9/breakdancer-max</action> --> <action type="shell_command">ls</action> <action type="shell_command">pwd</action> + <action type="shell_command">echo $REPOSITORY_INSTALL_DIR</action> <!-- <action type="shell_command">unzip 1_2_6.zip</action> <action type="shell_command">ls</action> <action type="shell_command">pwd</action> --> - <action type="shell_command">cp breakdancer-max $INSTALL_DIR/bin</action> - <action type="shell_command">cp bam2cfg.pl $INSTALL_DIR/bin</action> - <action type="shell_command">cp breakdancer2vcf.py $INSTALL_DIR/bin</action> + <action type="shell_command">cp $REPOSITORY_INSTALL_DIR/breakdancer-max $INSTALL_DIR/bin</action> + <action type="shell_command">cp $REPOSITORY_INSTALL_DIR/bam2cfg.pl $INSTALL_DIR/bin</action> + <action type="shell_command">cp $REPOSITORY_INSTALL_DIR/breakdancer2vcf.py $INSTALL_DIR/bin</action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action>