Mercurial > repos > jeremie > package_breakdancer_1_2_6

changeset 57:45d4731e884f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jeremie
date Tue, 01 Jul 2014 06:15:33 -0400
parents 66b145be8b33
children 82bc3a532efb
files tool_dependencies.xml
diffstat 1 files changed, 16 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Jul 01 06:03:22 2014 -0400
+++ b/tool_dependencies.xml	Tue Jul 01 06:15:33 2014 -0400
@@ -21,22 +21,32 @@
                         <source>bin/breakdancer-max</source>
                         <destination>$INSTALL_DIR/bin</destination>
                     </action>
-                    <action type="download_by_url">http://vt58zikphf.1fichier.com/bam2cfg.pl</action>
                     <action type="move_file">
-                        <source>bam2cfg.pl</source>
+                        <source>../perl/bam2cfg.pl</source>
                         <destination>$INSTALL_DIR/bin</destination>
                     </action>
-                    <!-- http://9ypffrj86h.1fichier.com/ -->
-                    <!--  <action type="download_by_url">http://7cv3od97gg.1fichier.com/1_2_6.tar.gz</action>
-                    -->    
-                    <action type="shell_command">ls</action>
+                    <!-- <action type="download_by_url">http://9ypffrj86h.1fichier.com/breakdancer2vcf.py</action> -->
+                    <action type="shell_command">git clone https://github.com/ALLBio/allbiotc2/blob/master/breakdancer/breakdancer2vcf.py</action>
+                    <!-- <action type="shell_command">ls</action>
                     <action type="shell_command">pwd</action>
                     <action type="change_directory">..</action>
                     <action type="shell_command">ls</action>
                     <action type="shell_command">pwd</action>
                     <action type="change_directory">..</action>
                     <action type="shell_command">ls</action>
+                    <action type="shell_command">pwd</action> -->
+                    <action type="move_file">
+                        <source>breakdancer2vcf.py</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <!-- <action type="shell_command">ls</action>
                     <action type="shell_command">pwd</action>
+                    <action type="change_directory">..</action>
+                    <action type="shell_command">ls</action>
+                    <action type="shell_command">pwd</action>
+                    <action type="change_directory">..</action>
+                    <action type="shell_command">ls</action>
+                    <action type="shell_command">pwd</action> -->
                     <!-- <action type="move_directory_files">
                         <source_directory>../../1_2_6</source_directory>
                         <destination_directory>$INSTALL_DIR/bin</destination_directory>