Mercurial > repos > jeltje > samtools_1_18_mpileup
changeset 1:afb57162f902 draft
Uploaded
author | jeltje |
---|---|
date | Mon, 12 Jan 2015 14:42:26 -0500 |
parents | 41c4eb01c566 |
children | 862b189568c7 |
files | samtools_mpileup.xml |
diffstat | 1 files changed, 5 insertions(+), 0 deletions(-) [+] |
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--- a/samtools_mpileup.xml Mon Jan 12 14:31:17 2015 -0500 +++ b/samtools_mpileup.xml Mon Jan 12 14:42:26 2015 -0500 @@ -3,13 +3,18 @@ <requirement type="package" version="0.1.18">samtools</requirement> </requirements> <description>runs basic mpileup on input control and tumor files</description> + <command>samtools mpileup "$bamc" "$bamt"> "$output1" +<!-- <command>samtools mpileup -q 1 -B "$index" "$bamc" "$bamt"> "$output1" +--> </command> <inputs> <param name="bamc" type="data" format="bam" label="BAM file (control)" /> <param name="bamt" type="data" format="bam" label="BAM file (tumor)" /> +<!-- <param name="index" type="select"> <options from_data_table="picard_index" /> +--> </param> </inputs> <outputs>