Mercurial > repos > jeltje > package_dnacopy_1_40_0

changeset 3:13038f781e47 draft

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Deleted selected files
author jeltje
date Thu, 08 Jan 2015 16:00:14 -0500
parents b6469f2cacb9
children 00eddd96019b
files tool_dependencies_2.xml
diffstat 1 files changed, 0 insertions(+), 25 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies_2.xml	Thu Jan 08 16:00:01 2015 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,25 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="R" version="3.1.2">
-        <repository changeset_revision="0:7cb487a32bde" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-
-    <package name="DNAcopy" version="1.40.0">
-        <install version="1.0">
-            <actions>
-                <action type="download_file">http://www.bioconductor.org/packages/release/bioc/src/contrib/DNAcopy_1.40.0.tar.gz</action>
-                <action type="set_environment_for_install">
-                    <repository changeset_revision="0:7cb487a32bde" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
-                            <package name="R" version="3.1.2" />
-                    </repository>
-                </action>
-                <action type="shell_command">export R_LIBS_USER=$INSTALL_DIR &amp;&amp; R CMD INSTALL DNAcopy_1.40.0.tar.gz</action>
-                <action type="set_environment">
-                    <environment_variable action="prepend_to" name="R_LIBS_USER">$INSTALL_DIR</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-        </readme>
-    </package>
-</tool_dependency>