Mercurial > repos > jcb-mpl > eics_merged
changeset 4:6f048a6b6b26 draft
Deleted selected files
| author | jcb-mpl |
|---|---|
| date | Thu, 12 May 2022 12:54:32 +0000 |
| parents | b82550e18244 |
| children | e2541ea9c53c |
| files | eics_merged.xml |
| diffstat | 1 files changed, 0 insertions(+), 103 deletions(-) [+] |
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--- a/eics_merged.xml Thu May 12 12:14:03 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,103 +0,0 @@ -<tool id="2021_05_eics_merged" name="EICs-synchronized -> EICs-merged" version="0.0.1"> - - <description> </description> - - - <requirements> - <requirement type="package" >scilab</requirement> - </requirements> - - - <stdio> - <exit_code range="1:" level="fatal" /> - </stdio> - - - <command> - <![CDATA[ - $__root_dir__/packages/scilab-*/bin/scilab-cli -nb -quit -f ${script_file} - ]]> - </command> - - - <configfiles> - <configfile name="script_file"> - <![CDATA[ exec("$__tool_directory__/src/mz_8_merge_list_x_tr_mz4.sci",-1); ... - lasterror(); ... - load("${list_eic4_files}"); ... // the variable name is also: list_eic4_files - [x_tr_mz4,ppm_coupe]=mz_8_merge_list_x_tr_mz4(list_eic4_files); ... - div2tab(x_tr_mz4,"${merged_x_tr_mz4file}"); ... - if ~isempty(lasterror(%f)) then ... - write(0,lasterror()); ... - end; ]]> - </configfile> - </configfiles> - - - <inputs> - <param name="list_eic4_files" format="mat" type="data" label="Select X data" help="a list of EIC-synchronized files with all the same mz values "/> - </inputs> - - - <outputs> - <data name="merged_x_tr_mz4file" format="tabular" label="EICs-merged"/> - </outputs> - - - <tests> - - <test> - <param name="list_eic4_files" value="EICs-synchronized.mat"/> - <output name="merged_x_tr_mz4file" file="EICs-merged.tab" compare="sim_size" delta="1000" /> - </test> - - </tests> - -<help> - - -.. class:: infomark - -**Authors** Jean-Claude Boulet (INRAE) - - ---------------------------------------------------- - -========================== -MEAN OF SEVERAL EICS FILES -========================== - ------------ -Description ------------ - -Several EIC files correspond to the same sample (e.g. repetitions). They share the same m/z values, not necessary the same retention times even if their RTi should be close. - -This function merges them into a single (RT x m/z) dataset - - ------------ -Input files ------------ - -**Select Xdata** - -At least two datasets, gathered into a single HDF5-scilab .dat file issued from the function: EICs-individual - EICs-synchronized - ------------- -Output files ------------- - -**EICs-merged** - -The merged EICs in a tabular file. - - -</help> - - -<citations> - -</citations> - -</tool>