changeset 25:945c5b1b9392 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README	Tue Sep 22 08:01:55 2015 -0400
@@ -0,0 +1,65 @@
+#RSAT tools - developed by Jocelyn Brayet <[e-mail]>
+#Copyright (C) 2015  Institut Curie
+#
+#Programs are free software: you can redistribute it and/or modify
+#it under the terms of the GNU General Public License as published by
+#the Free Software Foundation, either version 3 of the License, or
+#(at your option) any later version.
+#
+#Programs are distributed in the hope that it will be useful,
+#but WITHOUT ANY WARRANTY; without even the implied warranty of
+#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#GNU General Public License for more details.
+#
+#You should have received a copy of the GNU General Public License
+#along with this program.  If not, see <http://www.gnu.org/licenses/>.
+#
+###########################################################'
+
+1/ Additional softwares
+
+-> Python packages :
+
+	- argparse
+	- os
+	- urllib
+	- zipfile
+	- time
+	- platform
+	- suds
+
+###########################################################'
+
+2/ Recup organisms on each RSAT server :
+
+To use -organism option in different tools, you must create organisms files for each RSAT server. 
+Run supported-organisms_soap.py script with a terminal :
+
+	python supported-organisms_soap.py -f tab -galaxyPath /path/to/galaxy/tool-data
+
+		-> galaxyPath must be your tool-data path in your system 
+
+If you want help :
+
+	python supported-organisms_soap.py -h
+
+
+###########################################################'
+
+2/ Recup motif databases on each RSAT server :
+
+To use -motif_db option peak motifs, you must create motif databases files for each RSAT server. 
+Run supported-motif-databases_soap.py script with a terminal :
+
+	python supported-motif-databases_soap.py -galaxyPath /path/to/galaxy/tool-data
+
+		-> galaxyPath must be your tool-data path in your system 
+
+If you want help :
+
+	python supported-motif-databases_soap.py -h
+
+
+
+
+