Mercurial > repos > jbrayet > extractcentralregions_1_0_docker

<!--annotateGenes - developed by Jocelyn Brayet <jocelyn.brayet@curie.fr>
Copyright (C) 2015  Institut Curie

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
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This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
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<tool id="extractCentralRegions" name="Extract regions around peak maxima for a .bed file with peak coordinates" version="1.0">
  <description> </description>
  <requirements>
    <container type="docker">institutcuriengsintegration/extractcentralregions:1.0</container>
  </requirements>
  <command interpreter="perl">extractCentralRegions.pl -f $inputfile -l $left -o $output -head $has_header
 </command>
   <inputs>

    <param name="inputfile" type="data" label="ChIP peaks" value="ChIP peaks File" format="bed,txt"/>
    <param name="has_header" type="select" label="Your data file has a header?">
        <option value="0" selected="true">No</option>
        <option value="1">Yes</option>
    </param>
    <param name="left" type="integer" label="Legth of the central region" value="300"/>
  </inputs>
  <outputs>
    <data name="output" format="bed" label="central regions for ${inputfile.name}"/>
  </outputs>
  <help>
**What it does**

This tool extract central regions of ChIP-seq peaks

  </help>
</tool>
author	jbrayet
date	Tue, 05 Jan 2016 09:14:05 -0500
parents	1953d57c6941
children