Mercurial > repos > jasper > align_back_trans
changeset 11:680d842fa17a draft
Uploaded
| author | jasper |
|---|---|
| date | Fri, 03 Feb 2017 13:13:17 -0500 |
| parents | cb5684f992fe |
| children | 28459eecd18c |
| files | shed.yml |
| diffstat | 1 files changed, 26 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/shed.yml Fri Feb 03 13:13:17 2017 -0500 @@ -0,0 +1,26 @@ +name: align_back_trans +owner: peterjc +homepage_url: https://github.com/peterjc/pico_galaxy/tree/master/tools/align_back_trans +remote_repository_url: https://github.com/peterjc/pico_galaxy/tree/master/tools/align_back_trans +description: Thread nucleotides onto a protein alignment (back-translation) +long_description: | + Takes an input file of aligned protein sequences (typically FASTA or Clustal + format), and a matching file of unaligned nucleotide sequences (FASTA format, + using the same identifiers), and threads the nucleotide sequences onto the + protein alignment to produce a codon aware nucleotide alignment - which can + be viewed as a back translation. +categories: +- Fasta Manipulation +- Sequence Analysis +type: unrestricted +include: +- strip_components: 2 + source: + - ../../test-data/demo_nuc_align.fasta + - ../../test-data/demo_nucs.fasta + - ../../test-data/demo_nucs_trailing_stop.fasta + - ../../test-data/demo_prot_align.fasta + - ../../tools/align_back_trans/README.rst + - ../../tools/align_back_trans/align_back_trans.py + - ../../tools/align_back_trans/align_back_trans.xml + - ../../tools/align_back_trans/tool_dependencies.xml