Mercurial > repos > jankanis > blast2html2
changeset 62:b90441d0fe7d
Undo including $ENV[PYTHONPATH] in PYTHONPATH
If $ENV[PYTHONPATH] is empty, Galaxy replaces it with $PYTHONPATH instead of an empty string, which introduces
python 2 code in the python 3 path.
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Wed, 28 May 2014 14:02:38 +0200 |
| parents | c1dba49b72ef |
| children | fb823a59918f |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/tool_dependencies.xml Wed May 28 12:02:42 2014 +0200 +++ b/tool_dependencies.xml Wed May 28 14:02:38 2014 +0200 @@ -44,7 +44,7 @@ <action type="set_environment"> <!-- Remove any incoming PYTHONPATH elements from Galaxy's own environment --> - <environment_variable name="PYTHONPATH" action="set_to">$INSTALL_DIR/blast2html_venv/lib/python3.4/site-packages:$ENV[PYTHONPATH]</environment_variable> + <environment_variable name="PYTHONPATH" action="set_to">$INSTALL_DIR/blast2html_venv/lib/python3.4/site-packages</environment_variable> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/blast2html_venv/bin</environment_variable> <environment_variable name="PYTHONHOME" action="set_to"></environment_variable> <!-- To find shared libraries such as libssl or libxml2 -->