Mercurial > repos > jankanis > blast2html
changeset 102:8f02008a5f20 draft
look at all blast*.loc files; python2.6 compat fix
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Tue, 01 Jul 2014 16:00:29 +0200 |
| parents | e780606b7c25 |
| children | be7c94e29cd8 |
| files | blast2html.py |
| diffstat | 1 files changed, 6 insertions(+), 3 deletions(-) [+] |
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--- a/blast2html.py Mon Jun 30 17:51:56 2014 +0200 +++ b/blast2html.py Tue Jul 01 16:00:29 2014 +0200 @@ -16,6 +16,7 @@ from os import path from itertools import repeat from collections import defaultdict +import glob import argparse from lxml import objectify import jinja2 @@ -374,13 +375,15 @@ warnings.warn('Error in formatting gene bank link {} with {}: {}'.format(template, args, e)) return text if display_nolink else '' - classattr = 'class="{}" '.format(jinja2.escape(clas)) if clas is not None else '' - return jinja2.Markup("<a {}href=\"{}\">{}</a>".format(classattr, jinja2.escape(link), jinja2.escape(text))) + classattr = 'class="{0}" '.format(jinja2.escape(clas)) if clas is not None else '' + return jinja2.Markup("<a {0}href=\"{1}\">{2}</a>".format(classattr, jinja2.escape(link), jinja2.escape(text))) def read_genelinks(dir): links = {} - for f in ('blastdb.loc', 'blastdb_p.loc', 'blastdb_d.loc'): + # blastdb.loc, blastdb_p.loc, blastdb_d.loc, etc. + # sort reversed, so blastdb.loc will take precedence + for f in sorted(glob.glob(path.join(dir, 'blastdb*.loc')), reverse=True): try: f = open(path.join(dir, f)) for l in f.readlines():