Mercurial > repos > iuc > vt_variant_tools

changeset 4:bb468ee178d8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author bgruening
date Thu, 14 Aug 2014 09:57:39 -0400
parents 4ffcf0672e81
children b425a93b4da6
files vt_normalize.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/vt_normalize.xml	Thu Aug 14 07:40:02 2014 -0400
+++ b/vt_normalize.xml	Thu Aug 14 09:57:39 2014 -0400
@@ -11,7 +11,7 @@
         vt @BINARY@
             -o "${ outfile }"
             ##-q  do not print options and summary []
-            -w  window size for local sorting of variants [10000]
+            -w $window
 
             #if str( $intervals_file ) != 'None':
                 -I  "${intervals_file}"
@@ -20,7 +20,7 @@
             ##-i  intervals []
 
             #if $reference_source.reference_source_selector != "history":
-                -r "${reference_source.reference_genome.fields.path}"'
+                -r "${reference_source.reference_genome.fields.path}"
             #else:
                 -r "${reference_source.reference_genome}"
             #end if