Mercurial > repos > iuc > trinity_samples_qccheck

diff samples_qccheck.xml @ 5:8ccfc1cf9390 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 7efdf3224552d113a01043ee5bf4517d770df933
author iuc
date Fri, 31 Mar 2017 11:33:04 -0400
parents 24cd446d7571
children 6ac9b8130aa2
line wrap: on
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--- a/samples_qccheck.xml	Thu Mar 23 10:12:57 2017 -0400
+++ b/samples_qccheck.xml	Fri Mar 31 11:33:04 2017 -0400
@@ -1,16 +1,15 @@
-<tool id="trinity_samples_qccheck" name="RNASeq samples quality check" version="@WRAPPER_VERSION@.1">
+<tool id="trinity_samples_qccheck" name="RNASeq samples quality check" version="@WRAPPER_VERSION@.0">
     <description>for transcript quantification</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements">
-        <requirement type="package" version="2.30.0">bioconductor-biobase</requirement>
-        <requirement type="package" version="2.2.2">bioconductor-qvalue</requirement>
+        <requirement type="package" version="2.34.0">bioconductor-biobase</requirement>
+        <requirement type="package" version="2.6.0">bioconductor-qvalue</requirement>
     </expand>
-    <expand macro="stdio"/>
-    <command><![CDATA[
+    <command detect_errors="aggressive"><![CDATA[
 
-        ln -s "${matrix}" "input.matrix"
+        ln -f -s "${matrix}" "input.matrix"
 
         &&