comparison samples_qccheck.xml @ 5:8ccfc1cf9390 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 7efdf3224552d113a01043ee5bf4517d770df933

4:15f342582f74

<tool id="trinity_samples_qccheck" name="RNASeq samples quality check" version="@WRAPPER_VERSION@.1">
    <description>for transcript quantification</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements">
        <requirement type="package" version="2.30.0">bioconductor-biobase</requirement>
        <requirement type="package" version="2.2.2">bioconductor-qvalue</requirement>
    </expand>
    <expand macro="stdio"/>
    <command><![CDATA[

        ln -s "${matrix}" "input.matrix"

        &&

        PtR
        --matrix "input.matrix"

5:8ccfc1cf9390

<tool id="trinity_samples_qccheck" name="RNASeq samples quality check" version="@WRAPPER_VERSION@.0">
    <description>for transcript quantification</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements">
        <requirement type="package" version="2.34.0">bioconductor-biobase</requirement>
        <requirement type="package" version="2.6.0">bioconductor-qvalue</requirement>
    </expand>
    <command detect_errors="aggressive"><![CDATA[

        ln -f -s "${matrix}" "input.matrix"

        &&

        PtR
        --matrix "input.matrix"