Mercurial > repos > iuc > suite_mothur

changeset 13:9d951fa73152 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit f20b079c868afb2decc111751312b7f2a43f1dfd"
author iuc
date Thu, 26 Nov 2020 02:16:29 +0000
parents d174dbd82fc1
children 3c9bd5039329
files repository_dependencies.xml
diffstat 1 files changed, 113 insertions(+), 113 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Thu Nov 05 21:47:03 2020 +0000
+++ b/repository_dependencies.xml	Thu Nov 26 02:16:29 2020 +0000
@@ -1,132 +1,132 @@
 <?xml version="1.0" ?>
 <repositories description="A suite of tools designed to bring the mothur project into Galaxy.">
-    <repository owner="iuc" name="mothur_make_contigs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="4fc844fea7d0"/>
-    <repository owner="iuc" name="mothur_sens_spec" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="99259c0c9305"/>
-    <repository owner="iuc" name="mothur_reverse_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1896bf0e91a1"/>
-    <repository owner="iuc" name="mothur_remove_lineage" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="09f8f774c079"/>
+    <repository owner="iuc" name="mothur_make_group" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="3081851361a6"/>
+    <repository owner="iuc" name="mothur_classify_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="89a86dd616db"/>
+    <repository owner="iuc" name="mothur_get_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="38d3c42d94c8"/>
+    <repository owner="iuc" name="mothur_pcr_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="9410fb88ee00"/>
     <repository owner="iuc" name="mothur_make_fastq" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="08f087da9b78"/>
-    <repository owner="iuc" name="mothur_merge_sfffiles" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ef5f3a24eeda"/>
-    <repository owner="iuc" name="mothur_tree_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1436df61c9e6"/>
-    <repository owner="iuc" name="mothur_heatmap_sim" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2bafb697c4a9"/>
-    <repository owner="iuc" name="mothur_get_label" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="0d962cfcc378"/>
-    <repository owner="iuc" name="mothur_shhh_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="42c8df132016"/>
-    <repository owner="iuc" name="mothur_amova" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="fe25bea175a1"/>
-    <repository owner="iuc" name="mothur_cluster_fragments" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8e453046356a"/>
-    <repository owner="iuc" name="mothur_get_rabund" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="52bed4578097"/>
-    <repository owner="iuc" name="mothur_remove_otus" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a70bd3a60132"/>
-    <repository owner="iuc" name="mothur_sort_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="260b70247735"/>
-    <repository owner="iuc" name="mothur_count_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="dd22e5aa61e1"/>
-    <repository owner="iuc" name="mothur_sub_sample" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2912b1457142"/>
-    <repository owner="iuc" name="mothur_otu_hierarchy" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="4c6f5a1f9fb1"/>
-    <repository owner="iuc" name="mothur_summary_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ac2990de6a46"/>
-    <repository owner="iuc" name="mothur_unifrac_weighted" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="16102f2b5bd4"/>
-    <repository owner="iuc" name="mothur_bin_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a65a1942bfc3"/>
+    <repository owner="iuc" name="mothur_align_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a167200d41a5"/>
+    <repository owner="iuc" name="mothur_chimera_uchime" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="fc2952360cea"/>
+    <repository owner="iuc" name="mothur_nmds" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="95e8a6b306d3"/>
+    <repository owner="iuc" name="mothur_mimarks_attributes" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1f1780441036"/>
+    <repository owner="iuc" name="mothur_rarefaction_single" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a38fe9cb3f50"/>
+    <repository owner="iuc" name="mothur_remove_otulabels" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="27c2c94bc37e"/>
+    <repository owner="iuc" name="mothur_summary_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="448478408eda"/>
+    <repository owner="iuc" name="mothur_fastq_info" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="64e68bc9553b"/>
+    <repository owner="iuc" name="mothur_get_lineage" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="77156cd5dff5"/>
+    <repository owner="iuc" name="mothur_remove_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="4973159c56c0"/>
     <repository owner="iuc" name="mothur_cluster" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="93348a851909"/>
     <repository owner="iuc" name="mothur_pre_cluster" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="07b049446b92"/>
-    <repository owner="iuc" name="mothur_make_sra" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="c787a7811921"/>
-    <repository owner="iuc" name="mothur_classify_otu" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="0b637c048e2e"/>
-    <repository owner="iuc" name="mothur_mimarks_attributes" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1f1780441036"/>
-    <repository owner="iuc" name="mothur_collect_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="52b588885338"/>
+    <repository owner="iuc" name="mothur_cluster_split" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="0451e3fb7c27"/>
+    <repository owner="iuc" name="mothur_split_abund" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="fe118e943c16"/>
+    <repository owner="iuc" name="mothur_lefse" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8405663dcdf8"/>
+    <repository owner="iuc" name="mothur_classify_tree" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="467660f7f09d"/>
     <repository owner="iuc" name="mothur_rename_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="c935acea2596"/>
-    <repository owner="iuc" name="mothur_split_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="6069cb09b06c"/>
-    <repository owner="iuc" name="mothur_count_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="eec03b3e1b52"/>
-    <repository owner="iuc" name="mothur_trim_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="d32e4babf5dc"/>
-    <repository owner="iuc" name="mothur_get_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="38d3c42d94c8"/>
-    <repository owner="iuc" name="mothur_normalize_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="7b07325576dd"/>
-    <repository owner="iuc" name="mothur_mantel" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="fc22f35c74c9"/>
-    <repository owner="iuc" name="mothur_phylotype" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="c9bc0cd77abd"/>
-    <repository owner="iuc" name="mothur_nmds" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="95e8a6b306d3"/>
-    <repository owner="iuc" name="mothur_dist_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="4a87459769c9"/>
-    <repository owner="iuc" name="mothur_unique_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="139e40015db0"/>
-    <repository owner="iuc" name="mothur_summary_qual" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="6f75547fb02f"/>
-    <repository owner="iuc" name="mothur_make_lefse" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="09cdb6ef1410"/>
-    <repository owner="iuc" name="mothur_sffinfo" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="beb70b872cd5"/>
+    <repository owner="iuc" name="mothur_chimera_slayer" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="23b697e28dae"/>
+    <repository owner="iuc" name="mothur_filter_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="3e0007930b35"/>
+    <repository owner="iuc" name="mothur_classify_otu" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="0b637c048e2e"/>
+    <repository owner="iuc" name="mothur_reverse_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1896bf0e91a1"/>
+    <repository owner="iuc" name="mothur_get_rabund" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="52bed4578097"/>
     <repository owner="iuc" name="mothur_shhh_flows" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1ca696ab83f4"/>
-    <repository owner="iuc" name="mothur_get_sharedseqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1b625d18ce98"/>
+    <repository owner="iuc" name="mothur_make_design" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="494bc1a7097c"/>
+    <repository owner="iuc" name="mothur_taxonomy_to_krona" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="30fe3dd790a8"/>
+    <repository owner="iuc" name="mothur_chimera_bellerophon" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="b9f72d6fb487"/>
+    <repository owner="iuc" name="mothur_merge_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2ac28c32bca4"/>
+    <repository owner="iuc" name="mothur_get_otulist" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="564c08b1e215"/>
+    <repository owner="iuc" name="mothur_chimera_perseus" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="3e45c961b48d"/>
+    <repository owner="iuc" name="mothur_summary_tax" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="c646a100ea8d"/>
+    <repository owner="iuc" name="mothur_indicator" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="afbe444a6d86"/>
+    <repository owner="iuc" name="mothur_dist_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="faf5bbe1bda6"/>
+    <repository owner="iuc" name="mothur_get_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="56ce89a436d7"/>
+    <repository owner="iuc" name="mothur_otu_association" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8b844a3178a2"/>
+    <repository owner="iuc" name="mothur_get_sabund" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="b1866156c8f9"/>
     <repository owner="iuc" name="mothur_degap_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="c9f7758e6a6d"/>
-    <repository owner="iuc" name="mothur_list_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="05890ebf5afb"/>
-    <repository owner="iuc" name="mothur_classify_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="89a86dd616db"/>
-    <repository owner="iuc" name="mothur_cluster_split" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="0451e3fb7c27"/>
-    <repository owner="iuc" name="mothur_get_coremicrobiome" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="3871da6eaa55"/>
-    <repository owner="iuc" name="mothur_pcoa" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="016083cc5c06"/>
-    <repository owner="iuc" name="mothur_rarefaction_single" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a38fe9cb3f50"/>
-    <repository owner="iuc" name="mothur_parsimony" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="bf88f3b22a72"/>
-    <repository owner="iuc" name="mothur_pcr_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="9410fb88ee00"/>
-    <repository owner="iuc" name="mothur_get_relabund" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="faf7261fa19d"/>
-    <repository owner="iuc" name="mothur_anosim" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1f4bf60da924"/>
-    <repository owner="iuc" name="mothur_merge_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="2ac28c32bca4"/>
     <repository owner="iuc" name="mothur_primer_design" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="d4ac14e5a5b6"/>
-    <repository owner="iuc" name="mothur_remove_groups" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="99f21e76fe2c"/>
-    <repository owner="iuc" name="mothur_chimera_uchime" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="fc2952360cea"/>
-    <repository owner="iuc" name="mothur_chimera_bellerophon" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="b9f72d6fb487"/>
+    <repository owner="iuc" name="mothur_get_otus" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a7c5c0281f3c"/>
+    <repository owner="iuc" name="mothur_chimera_vsearch" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="7c5e95d53247"/>
+    <repository owner="iuc" name="mothur_seq_error" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="98a736c61a4a"/>
+    <repository owner="iuc" name="mothur_merge_sfffiles" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ef5f3a24eeda"/>
+    <repository owner="iuc" name="mothur_otu_hierarchy" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="4c6f5a1f9fb1"/>
+    <repository owner="iuc" name="mothur_libshuff" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="edc863a21eb2"/>
+    <repository owner="iuc" name="mothur_merge_taxsummary" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="bb2692a19876"/>
+    <repository owner="iuc" name="mothur_amova" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="fe25bea175a1"/>
+    <repository owner="iuc" name="mothur_homova" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="70df66fc2ee8"/>
+    <repository owner="iuc" name="mothur_summary_qual" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="6f75547fb02f"/>
+    <repository owner="iuc" name="mothur_phylo_diversity" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="9172c8123433"/>
     <repository owner="iuc" name="mothur_deunique_tree" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="e7c85464682e"/>
-    <repository owner="iuc" name="mothur_remove_otulabels" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="27c2c94bc37e"/>
-    <repository owner="iuc" name="mothur_get_lineage" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="77156cd5dff5"/>
-    <repository owner="iuc" name="mothur_chimera_vsearch" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="7c5e95d53247"/>
-    <repository owner="iuc" name="mothur_pca" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1cde06f5a68d"/>
+    <repository owner="iuc" name="mothur_cluster_fragments" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8e453046356a"/>
+    <repository owner="iuc" name="mothur_corr_axes" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="16b013161986"/>
+    <repository owner="iuc" name="mothur_cooccurrence" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="82db1ffa8f63"/>
+    <repository owner="iuc" name="mothur_unifrac_weighted" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="16102f2b5bd4"/>
+    <repository owner="iuc" name="mothur_tree_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="1436df61c9e6"/>
+    <repository owner="iuc" name="mothur_cluster_classic" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="713cc2e5e224"/>
+    <repository owner="iuc" name="mothur_remove_rare" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ef34c095a3e0"/>
+    <repository owner="iuc" name="mothur_get_mimarkspackage" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="291431ce14c8"/>
+    <repository owner="iuc" name="mothur_bin_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="a65a1942bfc3"/>
     <repository owner="iuc" name="mothur_merge_files" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="d07f30e65f54"/>
     <repository owner="iuc" name="mothur_trim_flows" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="9b9d2c3b5dd6"/>
-    <repository owner="iuc" name="mothur_chimera_ccode" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="4e58a094c0ec"/>
-    <repository owner="iuc" name="mothur_summary_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="448478408eda"/>
-    <repository owner="iuc" name="mothur_metastats" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="4e3fd4dbf171"/>
-    <repository owner="iuc" name="mothur_make_biom" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="4d1ffbc547d3"/>
-    <repository owner="iuc" name="mothur_clearcut" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="9d86940f48b8"/>
-    <repository owner="iuc" name="mothur_remove_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="4973159c56c0"/>
-    <repository owner="iuc" name="mothur_get_communitytype" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="f9eadcb82065"/>
-    <repository owner="iuc" name="mothur_screen_seqs" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="84e68e739923"/>
-    <repository owner="iuc" name="mothur_filter_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="3e0007930b35"/>
-    <repository owner="iuc" name="mothur_remove_rare" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="ef34c095a3e0"/>
-    <repository owner="iuc" name="mothur_split_abund" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="fe118e943c16"/>
-    <repository owner="iuc" name="mothur_seq_error" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="98a736c61a4a"/>
+    <repository owner="iuc" name="mothur_merge_count" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="74d878bb79d0"/>
     <repository owner="iuc" name="mothur_get_oturep" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="8b81fea62077"/>
-    <repository owner="iuc" name="mothur_chimera_check" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="4571a4863651"/>
-    <repository owner="iuc" name="mothur_chimera_slayer" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="23b697e28dae"/>
-    <repository owner="iuc" name="mothur_summary_single" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="52123c2bef29"/>
-    <repository owner="iuc" name="mothur_rarefaction_shared" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="da90b961dd1a"/>
-    <repository owner="iuc" name="mothur_taxonomy_to_krona" toolshed="https://testtoolshed.g2.bx.psu.edu" changeset_revision="30fe3dd790a8"/>
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 </repositories>
\ No newline at end of file