Mercurial > repos > iuc > snpeff

annotate snpEff_macros.xml @ 12:bbbab2d84e3b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 9d2052269bfbca81a5f9cd10c3153e611358a329
author iuc
date Tue, 24 Oct 2017 07:27:02 -0400
parents 81fba81425a4
children 7b299e699755
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
39bac90c773d Uploaded
iuc
parents:
diff changeset
1 <macros>
39bac90c773d Uploaded
iuc
parents:
diff changeset
2 <xml name="requirements">
39bac90c773d Uploaded
iuc
parents:
diff changeset
3 <requirements>
12
bbbab2d84e3b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 9d2052269bfbca81a5f9cd10c3153e611358a329
iuc
parents: 11
diff changeset
4 <requirement type="package" version="4.3r">snpeff</requirement>
0
39bac90c773d Uploaded
iuc
parents:
diff changeset
5 </requirements>
39bac90c773d Uploaded
iuc
parents:
diff changeset
6 </xml>
39bac90c773d Uploaded
iuc
parents:
diff changeset
7 <xml name="stdio">
39bac90c773d Uploaded
iuc
parents:
diff changeset
8 <stdio>
39bac90c773d Uploaded
iuc
parents:
diff changeset
9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
39bac90c773d Uploaded
iuc
parents:
diff changeset
10 <exit_code range="1:" level="fatal" description="Error" />
39bac90c773d Uploaded
iuc
parents:
diff changeset
11 </stdio>
39bac90c773d Uploaded
iuc
parents:
diff changeset
12 </xml>
7
aaa749ea91a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit d12a2e9dd273b4c23db48bbb747f32700887710e
iuc
parents: 2
diff changeset
13 <xml name="version_command">
8
1501e66908de planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 00efb7078cfb3664ef048925d0a6b02d8578c27d
iuc
parents: 7
diff changeset
14 <version_command><![CDATA[
11
81fba81425a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 5c6d595ecbf2e4e39c25662a165c9e475e01ecd1
iuc
parents: 8
diff changeset
15 snpEff -version
8
1501e66908de planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 00efb7078cfb3664ef048925d0a6b02d8578c27d
iuc
parents: 7
diff changeset
16 ]]></version_command>
7
aaa749ea91a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit d12a2e9dd273b4c23db48bbb747f32700887710e
iuc
parents: 2
diff changeset
17 </xml>
12
bbbab2d84e3b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 9d2052269bfbca81a5f9cd10c3153e611358a329
iuc
parents: 11
diff changeset
18 <token name="@WRAPPER_VERSION@">4.3r</token>
11
81fba81425a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 5c6d595ecbf2e4e39c25662a165c9e475e01ecd1
iuc
parents: 8
diff changeset
19 <token name="@SNPEFF_VERSION@">SnpEff4.3</token>
81fba81425a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 5c6d595ecbf2e4e39c25662a165c9e475e01ecd1
iuc
parents: 8
diff changeset
20 <token name="@SNPEFF_DATABASE_URL@">https://sourceforge.net/projects/snpeff/files/databases/v4_3/</token>
0
39bac90c773d Uploaded
iuc
parents:
diff changeset
21 <token name="@EXTERNAL_DOCUMENTATION@">
11
81fba81425a4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 5c6d595ecbf2e4e39c25662a165c9e475e01ecd1
iuc
parents: 8
diff changeset
22 For details about this tool, please go to: http://snpeff.sourceforge.net/SnpEff_manual.html
2
114f423f99c0 Uploaded
iuc
parents: 0
diff changeset
23 </token>
0
39bac90c773d Uploaded
iuc
parents:
diff changeset
24 <xml name="citations">
39bac90c773d Uploaded
iuc
parents:
diff changeset
25 <citations>
39bac90c773d Uploaded
iuc
parents:
diff changeset
26 <citation type="doi">10.4161/fly.19695</citation>
39bac90c773d Uploaded
iuc
parents:
diff changeset
27 <yield />
39bac90c773d Uploaded
iuc
parents:
diff changeset
28 </citations>
39bac90c773d Uploaded
iuc
parents:
diff changeset
29 </xml>
39bac90c773d Uploaded
iuc
parents:
diff changeset
30 </macros>