changeset 11:a13d872d7d8b draft

Deleted selected files

--- a/tool_test_output.json	Thu Oct 15 13:08:10 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1 +0,0 @@
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{"status": "success", "inputs": {"in_file": {"src": "hda", "id": "54f2a3a23292eb07"}, "n": "1"}, "job": {"inputs": {"in_file": {"src": "hda", "id": "54f2a3a23292eb07"}}, "update_time": "2015-02-18T11:43:53.292491", "tool_id": "seqtk_cutN", "outputs": {"default": {"src": "hda", "id": "8155e4b4bf1581ff"}}, "stdout": "", "command_line": "seqtk cutN -n 1 -p 10  /tmp/tmpjaBvNBfiles/000/dataset_3.dat > /tmp/tmpjaBvNBfiles/000/dataset_4.dat", "exit_code": 0, "state": "ok", "create_time": "2015-02-18T11:43:48.995235", "params": {"p": "\"10\"", "chromInfo": "\"/var/lib/jenkins/galaxy/default/tool-data/shared/ucsc/chrom/hg17.len\"", "dbkey": "\"hg17\"", "g": "\"False\"", "n": "\"1\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "external_id": "1430", "id": "8155e4b4bf1581ff", "user_email": "[e-mail]"}}, "id": "functional.test_toolbox.TestForTool_seqtk_cutN.test_tool_000000", "has_data": true}, {"data": {"status": "success", "inputs": {"in_file": {"src": "hda", "id": 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"5449172d6ff5669b"}}, "stdout": "", "command_line": "seqtk hety -w 8 -t 5  /tmp/tmpjaBvNBfiles/000/dataset_9.dat | awk 'BEGIN{print \"#chr\\tstart\\tend\\tA\\tB\\tnum_het\"}1' > /tmp/tmpjaBvNBfiles/000/dataset_10.dat", "exit_code": 0, "state": "ok", "create_time": "2015-02-18T11:44:43.403095", "params": {"chromInfo": "\"/var/lib/jenkins/galaxy/default/tool-data/shared/ucsc/chrom/hg17.len\"", "dbkey": "\"hg17\"", "m": "\"False\"", "t": "\"5\"", "w": "\"8\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "external_id": "1493", "id": "5449172d6ff5669b", "user_email": "[e-mail]"}}, "id": "functional.test_toolbox.TestForTool_seqtk_hety.test_tool_000000", "has_data": true}, {"data": {"status": "success", "inputs": {"in_file": {"src": "hda", "id": "9ce08b2254e4d5ed"}}, "job": {"inputs": {"in_file": {"src": "hda", "id": "9ce08b2254e4d5ed"}}, "update_time": "2015-02-18T11:45:03.232698", "tool_id": "seqtk_listhet", "outputs": {"default": {"src": "hda", "id": "80b8022ff3f677b7"}}, "stdout": "", "command_line": "seqtk listhet /tmp/tmpjaBvNBfiles/000/dataset_11.dat  | awk 'BEGIN{print \"#chr\\tposition\\tbase\"}1' > /tmp/tmpjaBvNBfiles/000/dataset_12.dat", "exit_code": 0, "state": "ok", "create_time": "2015-02-18T11:44:58.854932", "params": {"chromInfo": "\"/var/lib/jenkins/galaxy/default/tool-data/shared/ucsc/chrom/hg17.len\"", "dbkey": "\"hg17\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "external_id": "1514", "id": "80b8022ff3f677b7", "user_email": "[e-mail]"}}, "id": "functional.test_toolbox.TestForTool_seqtk_listhet.test_tool_000000", "has_data": true}, {"data": {"status": "success", "inputs": {"in_fa2": {"src": "hda", "id": "1ae74d26531588b0"}, "in_fa1": {"src": "hda", "id": "b54fb481e575bccc"}}, "job": {"inputs": {"in_fa2": {"src": "hda", "id": "1ae74d26531588b0"}, "in_fa1": {"src": "hda", "id": "b54fb481e575bccc"}}, "update_time": "2015-02-18T11:45:30.017193", "tool_id": "seqtk_mergefa", "outputs": {"default": {"src": "hda", "id": "440a6c2b5d9efe20"}}, "stdout": "", "command_line": "seqtk mergefa -q 0      /tmp/tmpjaBvNBfiles/000/dataset_13.dat /tmp/tmpjaBvNBfiles/000/dataset_14.dat  > /tmp/tmpjaBvNBfiles/000/dataset_15.dat", "exit_code": 0, "state": "ok", "create_time": "2015-02-18T11:45:25.868594", "params": {"i": "\"False\"", "h": "\"False\"", "m": "\"False\"", "dbkey": "\"hg17\"", "q": "\"0\"", "r": "\"False\"", "chromInfo": "\"/var/lib/jenkins/galaxy/default/tool-data/shared/ucsc/chrom/hg17.len\""}, "stderr": "[stk_mergefa] (same,diff,hom-het,het-hom,het-het)=(7,2,1,0,0)\n", "job_metrics": [], "model_class": "Job", "external_id": "1546", "id": "440a6c2b5d9efe20", "user_email": "[e-mail]"}}, "id": "functional.test_toolbox.TestForTool_seqtk_mergefa.test_tool_000000", "has_data": true}, {"data": {"status": "success", "inputs": {"m": "True", "in_fa2": {"src": "hda", "id": "27ee89e2e3d631e0"}, "in_fa1": {"src": "hda", "id": "ea0b941dfbe636f8"}}, "job": {"inputs": {"in_fa2": {"src": "hda", "id": "27ee89e2e3d631e0"}, "in_fa1": {"src": "hda", "id": "ea0b941dfbe636f8"}}, "update_time": "2015-02-18T11:45:55.971535", "tool_id": "seqtk_mergefa", "outputs": {"default": {"src": "hda", "id": "61f03d5eef6f1538"}}, "stdout": "", "command_line": "seqtk mergefa -q 0  -m    /tmp/tmpjaBvNBfiles/000/dataset_16.dat /tmp/tmpjaBvNBfiles/000/dataset_17.dat  > /tmp/tmpjaBvNBfiles/000/dataset_18.dat", "exit_code": 0, "state": "ok", "create_time": "2015-02-18T11:45:51.174795", "params": {"i": "\"False\"", "h": "\"False\"", "m": "\"True\"", "dbkey": "\"hg17\"", "q": "\"0\"", "r": "\"False\"", "chromInfo": "\"/var/lib/jenkins/galaxy/default/tool-data/shared/ucsc/chrom/hg17.len\""}, "stderr": "[stk_mergefa] (same,diff,hom-het,het-hom,het-het)=(7,2,1,0,0)\n", "job_metrics": [], "model_class": "Job", "external_id": "1577", "id": "61f03d5eef6f1538", "user_email": "[e-mail]"}}, "id": "functional.test_toolbox.TestForTool_seqtk_mergefa.test_tool_000001", "has_data": true}, {"data": {"status": "success", "inputs": {"in_fq2": {"src": "hda", "id": "b28067233c6d9fa0"}, "in_fq1": {"src": "hda", "id": "d5b3e51b7b790121"}}, "job": {"inputs": {"in_fq2": {"src": "hda", "id": "b28067233c6d9fa0"}, "in_fq1": {"src": "hda", "id": "d5b3e51b7b790121"}}, "update_time": "2015-02-18T11:46:23.527536", "tool_id": "seqtk_mergepe", "outputs": {"default": {"src": "hda", "id": "c18708cec3343c17"}}, "stdout": "", "command_line": "seqtk mergepe /tmp/tmpjaBvNBfiles/000/dataset_19.dat /tmp/tmpjaBvNBfiles/000/dataset_20.dat > /tmp/tmpjaBvNBfiles/000/dataset_21.dat", "exit_code": 0, "state": "ok", "create_time": "2015-02-18T11:46:17.641829", "params": {"chromInfo": "\"/var/lib/jenkins/galaxy/default/tool-data/shared/ucsc/chrom/hg17.len\"", "dbkey": "\"hg17\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "external_id": "1608", "id": "c18708cec3343c17", "user_email": "[e-mail]"}}, "id": "functional.test_toolbox.TestForTool_seqtk_mergepe.test_tool_000000", "has_data": true}, {"data": {"status": "success", "inputs": {"in_snp": {"src": "hda", "id": "3e4e8de146a035f5"}, "in_file": {"src": "hda", "id": "5ca39fba41b940d1"}}, "job": {"inputs": {"in_snp": {"src": "hda", "id": "3e4e8de146a035f5"}, "in_file": {"src": "hda", "id": "5ca39fba41b940d1"}}, "update_time": "2015-02-18T11:46:50.008659", "tool_id": "seqtk_mutfa", "outputs": {"default": {"src": "hda", "id": "a1e670e1ea0da54b"}}, "stdout": "", "command_line": "seqtk mutfa /tmp/tmpjaBvNBfiles/000/dataset_22.dat /tmp/tmpjaBvNBfiles/000/dataset_23.dat > /tmp/tmpjaBvNBfiles/000/dataset_24.dat", "exit_code": 0, "state": "ok", "create_time": "2015-02-18T11:46:44.942417", "params": {"chromInfo": "\"/var/lib/jenkins/galaxy/default/tool-data/shared/ucsc/chrom/hg17.len\"", "dbkey": "\"hg17\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "external_id": "1639", "id": "a1e670e1ea0da54b", "user_email": "[e-mail]"}}, "id": "functional.test_toolbox.TestForTool_seqtk_mutfa.test_tool_000000", "has_data": true}, {"data": {"status": "success", "inputs": {"in_file": {"src": "hda", "id": "9a22496ee796fbfc"}}, "job": {"inputs": {"in_file": {"src": "hda", "id": "9a22496ee796fbfc"}}, "update_time": "2015-02-18T11:47:10.259642", "tool_id": "seqtk_randbase", "outputs": {"default": {"src": "hda", "id": "0535d515f68130b3"}}, "stdout": "", "command_line": "seqtk randbase /tmp/tmpjaBvNBfiles/000/dataset_25.dat > /tmp/tmpjaBvNBfiles/000/dataset_26.dat", "exit_code": 0, "state": "ok", "create_time": "2015-02-18T11:47:05.137625", "params": {"chromInfo": "\"/var/lib/jenkins/galaxy/default/tool-data/shared/ucsc/chrom/hg17.len\"", "dbkey": "\"hg17\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "external_id": "1659", "id": "0535d515f68130b3", "user_email": "[e-mail]"}}, "id": "functional.test_toolbox.TestForTool_seqtk_randbase.test_tool_000000", "has_data": true}, {"data": {"status": "success", "inputs": {"s": "4", "in_file": {"src": "hda", "id": "238993350abc9bfd"}, "subsample_size": "4"}, "job": {"inputs": {"in_file": {"src": 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"2015-02-18T11:47:47.706460", "tool_id": "seqtk_seq", "outputs": {"default": {"src": "hda", "id": "a908e285532ac9b0"}}, "stdout": "", "command_line": "seqtk seq -q 0 -X 255 -l 0 -Q 33 -s 11 -f 1.0 -L 0  -r        /tmp/tmpjaBvNBfiles/000/dataset_29.dat > /tmp/tmpjaBvNBfiles/000/dataset_30.dat", "exit_code": 0, "state": "ok", "create_time": "2015-02-18T11:47:42.743844", "params": {"A": "\"False\"", "Q": "\"33\"", "C": "\"False\"", "f": "\"1.0\"", "s": "\"11\"", "M": "\"\"", "c": "\"False\"", "dbkey": "\"hg17\"", "L": "\"0\"", "q": "\"0\"", "N": "\"False\"", "r": "\"True\"", "n": "\"\"", "V": "\"False\"", "x2": "\"False\"", "X": "\"255\"", "x1": "\"False\"", "chromInfo": "\"/var/lib/jenkins/galaxy/default/tool-data/shared/ucsc/chrom/hg17.len\"", "l": "\"0\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "external_id": "1699", "id": "a908e285532ac9b0", "user_email": "[e-mail]"}}, "id": "functional.test_toolbox.TestForTool_seqtk_seq.test_tool_000000", "has_data": true}, {"data": {"status": "success", "inputs": {"source|type": "name", "source|name_list": {"src": "hda", "id": "3777da040b354424"}, "in_file": {"src": "hda", "id": "27a22803849b1486"}, "t": "False"}, "job": {"inputs": {"in_file": {"src": "hda", "id": "27a22803849b1486"}, "name_list": {"src": "hda", "id": "3777da040b354424"}}, "update_time": "2015-02-18T11:48:14.668337", "tool_id": "seqtk_subseq", "outputs": {"default": {"src": "hda", "id": "2d785e48ad6d0148"}}, "stdout": "", "command_line": "seqtk subseq -l 0 /tmp/tmpjaBvNBfiles/000/dataset_31.dat  /tmp/tmpjaBvNBfiles/000/dataset_32.dat   > /tmp/tmpjaBvNBfiles/000/dataset_33.dat", "exit_code": 0, "state": "ok", "create_time": "2015-02-18T11:48:09.959329", "params": {"source": "{\"type\": \"name\", \"name_list\": 32, \"__current_case__\": 1}", "chromInfo": "\"/var/lib/jenkins/galaxy/default/tool-data/shared/ucsc/chrom/hg17.len\"", "l": "\"0\"", "dbkey": "\"hg17\"", "t": "\"False\""}, "stderr": "", "job_metrics": [], "model_class": "Job", 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