Mercurial > repos > iuc > rpy_statistics_collection

Galaxy wrapper using R and RPy2
===============================

These wrappers are based on RPy1 versions included in Galaxy-Main and
ported by John Chilton and Björn Grüning to RPy2 and Galaxy tool dependencies.
Please see the following Mail from galaxy-dev:

  http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-May/014694.html


Missing ports to RPy2:

- rgenetics/rgQC.py
- regVariation/rcve.py
- ngs_simulation/ngs_simulation.py
- metag_tools/short_reads_figure_high_quality_length.py
- taxonomy/poisson2test.py

ToDo:

- testing
- porting of missing tools


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History
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  - v0.1: no release yet


Wrapper Licence (MIT/BSD style)
===============================

Permission to use, copy, modify, and distribute this software and its
documentation with or without modifications and for any purpose and
without fee is hereby granted, provided that any copyright notices
appear in all copies and that both those copyright notices and this
permission notice appear in supporting documentation, and that the
names of the contributors or copyright holders not be used in
advertising or publicity pertaining to distribution of the software
without specific prior permission.

THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
OR PERFORMANCE OF THIS SOFTWARE.
author	iuc
date	Fri, 09 Jan 2015 12:56:07 -0500
parents	ffcdde989859
children