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author iuc
date Fri, 09 Jan 2015 12:56:07 -0500
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0:ffcdde989859 1:2e7bc1bb2dbe
1 Galaxy wrapper using R and RPy2 1 Galaxy wrapper using R and RPy2
2 =============================== 2 ===============================
3 3
4 These wrappers are based on RPy1 versions included in Galaxy-Main and 4 These wrappers are based on RPy1 versions included in Galaxy-Main and
5 ported by John Chilton to RPy2. Please see the following Mail from 5 ported by John Chilton and Björn Grüning to RPy2 and Galaxy tool dependencies.
6 galaxy-dev: 6 Please see the following Mail from galaxy-dev:
7 7
8 http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-May/014694.html 8 http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-May/014694.html
9
9 10
10 Missing ports to RPy2: 11 Missing ports to RPy2:
11 12
12 - rgenetics/rgQC.py 13 - rgenetics/rgQC.py
13 - regVariation/rcve.py 14 - regVariation/rcve.py
15 - metag_tools/short_reads_figure_high_quality_length.py 16 - metag_tools/short_reads_figure_high_quality_length.py
16 - taxonomy/poisson2test.py 17 - taxonomy/poisson2test.py
17 18
18 ToDo: 19 ToDo:
19 20
20 - add tool_dependencies.xml to RPy2 and R-3.0
21 - testing 21 - testing
22 - porting of missing tools 22 - porting of missing tools
23
24
25 ============
26 Installation
27 ============
28
29 23
30 24
31 ======= 25 =======
32 History 26 History
33 ======= 27 =======
34 28
35
36 - v0.1: no release yet 29 - v0.1: no release yet
37
38
39 30
40 31
41 Wrapper Licence (MIT/BSD style) 32 Wrapper Licence (MIT/BSD style)
42 =============================== 33 ===============================
43 34