Mercurial > repos > iuc > package_snpeff_3_6

changeset 1:807f8db26f0a draft default tip

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Uploaded
author iuc
date Wed, 18 Feb 2015 11:36:02 -0500
parents d782e523a77b
children
files tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Aug 15 05:58:03 2014 -0400
+++ b/tool_dependencies.xml	Wed Feb 18 11:36:02 2015 -0500
@@ -8,6 +8,7 @@
                     <source_directory>.</source_directory>
                     <destination_directory>$INSTALL_DIR</destination_directory>
                 </action>
+                <action type="shell_command">sed -i.orig -e 's;http://downloads.sourceforge.net/project/snpeff/databases;https://snpeff-data.galaxyproject.org/databases;g' $INSTALL_DIR/snpEff.config</action>
                 <action type="set_environment">
                     <environment_variable name="SNPEFF_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                 </action>