Mercurial > repos > iuc > package_scikit_learn_0_15
view tool_dependencies.xml @ 0:86e744d45190 draft
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author | iuc |
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date | Thu, 09 Oct 2014 05:20:06 -0400 |
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children | 96b760daa145 |
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<?xml version="1.0"?> <tool_dependency> <package name="numpy" version="1.9"> <repository changeset_revision="49a8bba001d7" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="scipy" version="0.14"> <repository changeset_revision="8512070824f3" name="package_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="matplotlib" version="1.2.1"> <repository changeset_revision="de9c362fb3f2" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="scikit_learn" version="0.15"> <install version="1.0"> <actions> <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz#md5=d9822ad0238e17b382a3c756ea94fe0d</action> <action type="set_environment_for_install"> <repository changeset_revision="49a8bba001d7" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="numpy" version="1.9" /> </repository> <repository changeset_revision="8512070824f3" name="package_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="scipy" version="0.14" /> </repository> <repository changeset_revision="de9c362fb3f2" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="matplotlib" version="1.2.1" /> </repository> </action> <action type="make_directory">$INSTALL_DIR/lib/python</action> <action language="cheetah" type="template_command"> export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python && export PATH=\$PATH:$env.PATH_NUMPY && export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB && python setup.py install --install-lib $env.INSTALL_DIR/lib/python </action> <action type="set_environment"> <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable> <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable> <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable> <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable> </action> </actions> </install> <readme> Compiling scikit-learn requires a C compiler (typically gcc). The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN. Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies </readme> </package> </tool_dependency>