Mercurial > repos > iuc > package_scikit_learn_0_15
comparison tool_dependencies.xml @ 0:86e744d45190 draft
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| author | iuc |
|---|---|
| date | Thu, 09 Oct 2014 05:20:06 -0400 |
| parents | |
| children | 96b760daa145 |
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| -1:000000000000 | 0:86e744d45190 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="numpy" version="1.9"> | |
| 4 <repository changeset_revision="49a8bba001d7" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="scipy" version="0.14"> | |
| 7 <repository changeset_revision="8512070824f3" name="package_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 <package name="matplotlib" version="1.2.1"> | |
| 10 <repository changeset_revision="de9c362fb3f2" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 11 </package> | |
| 12 <package name="scikit_learn" version="0.15"> | |
| 13 <install version="1.0"> | |
| 14 <actions> | |
| 15 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz#md5=d9822ad0238e17b382a3c756ea94fe0d</action> | |
| 16 <action type="set_environment_for_install"> | |
| 17 <repository changeset_revision="49a8bba001d7" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 18 <package name="numpy" version="1.9" /> | |
| 19 </repository> | |
| 20 <repository changeset_revision="8512070824f3" name="package_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 21 <package name="scipy" version="0.14" /> | |
| 22 </repository> | |
| 23 <repository changeset_revision="de9c362fb3f2" name="package_matplotlib_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | |
| 24 <package name="matplotlib" version="1.2.1" /> | |
| 25 </repository> | |
| 26 </action> | |
| 27 | |
| 28 <action type="make_directory">$INSTALL_DIR/lib/python</action> | |
| 29 <action language="cheetah" type="template_command"> | |
| 30 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python && | |
| 31 | |
| 32 export PATH=\$PATH:$env.PATH_NUMPY && | |
| 33 export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB && | |
| 34 | |
| 35 python setup.py install --install-lib $env.INSTALL_DIR/lib/python | |
| 36 </action> | |
| 37 <action type="set_environment"> | |
| 38 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | |
| 39 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 40 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> | |
| 41 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> | |
| 42 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable> | |
| 43 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable> | |
| 44 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable> | |
| 45 | |
| 46 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable> | |
| 47 </action> | |
| 48 </actions> | |
| 49 </install> | |
| 50 <readme> | |
| 51 Compiling scikit-learn requires a C compiler (typically gcc). | |
| 52 The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN. | |
| 53 | |
| 54 Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies | |
| 55 </readme> | |
| 56 </package> | |
| 57 </tool_dependency> |