Mercurial > repos > iuc > package_scikit_learn_0_15

annotate tool_dependencies.xml @ 6:87189153f859 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_15 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921
author iuc
date Fri, 09 Oct 2015 05:25:54 -0400
parents 7043eebb908f
children 5f2ebbb28bce
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="numpy" version="1.9">
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4 <repository changeset_revision="816d3480b0b1" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="scipy" version="0.14">
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7 <repository changeset_revision="01f0415771cf" name="package_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="matplotlib" version="1.4">
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10 <repository changeset_revision="2ad8f58bf6cf" name="package_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="scikit_learn" version="0.15">
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13 <install version="1.0">
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14 <actions>
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15 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz#md5#d9822ad0238e17b382a3c756ea94fe0d</action>
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16 <action type="set_environment_for_install">
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17 <repository changeset_revision="816d3480b0b1" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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18 <package name="numpy" version="1.9" />
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19 </repository>
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20 <repository changeset_revision="01f0415771cf" name="package_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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21 <package name="scipy" version="0.14" />
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22 </repository>
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23 <repository changeset_revision="2ad8f58bf6cf" name="package_matplotlib_1_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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24 <package name="matplotlib" version="1.4" />
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25 </repository>
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26 </action>
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28 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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29 <action type="template_command">
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30 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
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31 python setup.py install --install-lib $INSTALL_DIR/lib/python
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32 </action>
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33 <action type="set_environment">
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34 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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35 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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36 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
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37 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
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38 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
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39 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable>
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40 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable>
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41 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable>
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42 </action>
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43 </actions>
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44 </install>
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45 <readme>
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46 Compiling scikit-learn requires a C compiler (typically gcc).
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47 The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN.
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48
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49 Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies
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50 </readme>
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51 </package>
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52 </tool_dependency>