Mercurial > repos > iuc > package_r_3_0_3
changeset 9:6f4eaf9dab65 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_3 commit 630c0f1ac3419322998d92a1653f260c664283ab
author | iuc |
---|---|
date | Mon, 04 Jan 2016 05:39:49 -0500 |
parents | 963e18191af1 |
children | 9a289bea9051 |
files | tool_dependencies.xml |
diffstat | 1 files changed, 9 insertions(+), 24 deletions(-) [+] |
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--- a/tool_dependencies.xml Tue Dec 22 19:34:16 2015 -0500 +++ b/tool_dependencies.xml Mon Jan 04 05:39:49 2016 -0500 @@ -24,7 +24,7 @@ </actions> <actions> <package name="readline" version="6.2"> - <repository changeset_revision="618c94461551" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="1007a3015bdb" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="libpng" version="1.6.7"> <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> @@ -38,9 +38,12 @@ <package name="freetype" version="2.5.2"> <repository changeset_revision="34ebf47e4941" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> + <package name="ncurses" version="5.9"> + <repository changeset_revision="47ad4d7ba9fe" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.0.3.tar.gz</action> <action type="set_environment_for_install"> - <repository changeset_revision="618c94461551" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="1007a3015bdb" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="readline" version="6.2" /> </repository> <repository changeset_revision="833849e0ddfc" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> @@ -55,29 +58,11 @@ <repository changeset_revision="34ebf47e4941" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="freetype" version="2.5.2" /> </repository> + <repository changeset_revision="47ad4d7ba9fe" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="ncurses" version="5.9" /> + </repository> </action> - <action type="shell_command"> - export LDFLAGS="-L$PNG_LIBS -L$READLINE_LIB_PATH" && - export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" && - export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" && - export LDFLAGS="$LDFLAGS -Wl,-rpath,$PNG_LIB_PATH" && - export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" && - export CFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDE_PATH" && - export CXXFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDE_PATH" && - export CPPFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDE_PATH" && - ./configure --with-tcltk \ - --with-blas \ - --with-lapack \ - --with-readline \ - --with-cairo \ - --with-libpng \ - --without-x \ - --enable-R-shlib \ - --disable-R-framework \ - --libdir=$INSTALL_DIR/lib \ - --prefix=$INSTALL_DIR - </action> - <action type="make_install" /> + <action type="autoconf">--with-tcltk --with-blas --with-lapack --with-readline --with-cairo --with-libpng --without-x --without-aqua --enable-R-shlib --disable-R-framework --libdir=$INSTALL_DIR/lib</action> <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action> <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action> </actions>