comparison tool_dependencies.xml @ 39:e39f09681864 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit 4c44b550f39ec90756c7bf5277fa1341de767bfd-dirty
author iuc
date Thu, 03 Sep 2015 05:13:02 -0400
parents 17b9d79ae892
children 041df41e2657
comparison
equal deleted inserted replaced
38:17b9d79ae892 39:e39f09681864
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="zlib" version="1.2.8"> 3 <package name="zlib" version="1.2.8">
4 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="readline" version="6.2"> 6 <package name="readline" version="6.3">
7 <repository changeset_revision="93fad0d5cab9" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="40f8ebe365e9" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="bzlib" version="1.0.6"> 9 <package name="bzlib" version="1.0.6">
10 <repository changeset_revision="70832954fc3c" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="0d0ccd64f5d7" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="xz" version="5.0.5"> 12 <package name="xz" version="5.0.5">
13 <repository changeset_revision="c2168b2cb541" name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="c2168b2cb541" name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package> 14 </package>
15 <!--
16 <package name="openssl" version="1.0">
17 <repository name="package_openssl_1_0" owner="iuc" prior_installation_required="True" />
18 </package>
19 -->
20 <package name="sqlite" version="3.8.3"> 15 <package name="sqlite" version="3.8.3">
21 <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
22 </package> 17 </package>
23 <package name="gdbm" version="1.11"> 18 <package name="gdbm" version="1.11">
24 <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 19 <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
25 </package> 20 </package>
26 <package name="ncurses" version="5.9"> 21 <package name="ncurses" version="6.0">
27 <repository changeset_revision="387c0609c0b7" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 22 <repository changeset_revision="9331b44bf167" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
28 </package> 23 </package>
29 <package name="python" version="2.7"> 24 <package name="python" version="2.7">
30 <install version="1.0"> 25 <install version="1.0">
31 <actions> 26 <actions>
32 <action type="download_by_url">https://www.python.org/ftp/python/2.7.10/Python-2.7.10.tgz</action> 27 <action type="download_by_url">https://www.python.org/ftp/python/2.7.10/Python-2.7.10.tgz</action>
33 28
34 <action type="set_environment_for_install"> 29 <action type="set_environment_for_install">
35 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 30 <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
36 <package name="zlib" version="1.2.8" /> 31 <package name="zlib" version="1.2.8" />
37 </repository> 32 </repository>
38 <repository changeset_revision="93fad0d5cab9" name="package_readline_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 33 <repository changeset_revision="40f8ebe365e9" name="package_readline_6_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
39 <package name="readline" version="6.2" /> 34 <package name="readline" version="6.3" />
40 </repository> 35 </repository>
41 <repository changeset_revision="70832954fc3c" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 36 <repository changeset_revision="0d0ccd64f5d7" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
42 <package name="bzlib" version="1.0.6" /> 37 <package name="bzlib" version="1.0.6" />
43 </repository> 38 </repository>
44 <repository changeset_revision="c2168b2cb541" name="package_xz_5_0_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 39 <repository changeset_revision="c2168b2cb541" name="package_xz_5_0_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
45 <package name="xz" version="5.0.5" /> 40 <package name="xz" version="5.0.5" />
46 </repository> 41 </repository>
47 <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 42 <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
48 <package name="sqlite" version="3.8.3" /> 43 <package name="sqlite" version="3.8.3" />
49 </repository> 44 </repository>
50 <!--
51 <repository name="package_openssl_1_0" owner="iuc">
52 <package name="openssl" version="1.0" />
53 </repository>
54 -->
55 <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 45 <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
56 <package name="gdbm" version="1.11" /> 46 <package name="gdbm" version="1.11" />
57 </repository> 47 </repository>
58 <repository changeset_revision="387c0609c0b7" name="package_ncurses_5_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 48 <repository changeset_revision="9331b44bf167" name="package_ncurses_6_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
59 <package name="ncurses" version="5.9" /> 49 <package name="ncurses" version="6.0" />
60 </repository> 50 </repository>
61 </action> 51 </action>
62 <!-- by default python is not looking af LD_INCLUDE_PATH and Co. --> 52 <!-- by default python is not looking af LD_INCLUDE_PATH and Co. -->
63 <action type="shell_command">sed -i.bak -e "s/if host_platform == 'atheos':/if True:/g" setup.py</action> 53 <action type="shell_command">sed -i.bak -e "s/if host_platform == 'atheos':/if True:/g" setup.py</action>
64 54
65 <action type="autoconf" /> 55 <action type="autoconf">-fPIC</action>
66 <action type="download_file">https://bitbucket.org/pypa/setuptools/get/6.1.tar.bz2</action> 56 <action type="download_file">https://bitbucket.org/pypa/setuptools/get/6.1.tar.bz2</action>
67 <action type="shell_command">tar -xjf 6.1.tar.bz2</action> 57 <action type="shell_command">tar -xjf 6.1.tar.bz2</action>
68 <action type="change_directory">pypa-setuptools-7ea80190d494</action> 58 <action type="change_directory">pypa-setuptools-7ea80190d494</action>
69 59
70 <action type="shell_command"> 60 <action type="shell_command">