view tool_dependencies.xml @ 40:041df41e2657 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7 commit 4c44b550f39ec90756c7bf5277fa1341de767bfd-dirty

<?xml version="1.0"?>
<tool_dependency>
  <package name="zlib" version="1.2.8">
    <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
  <package name="readline" version="6.3">
    <repository changeset_revision="40f8ebe365e9" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
  <package name="bzlib" version="1.0.6">
    <repository changeset_revision="0d0ccd64f5d7" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
  <package name="xz" version="5.0.5">
    <repository changeset_revision="c2168b2cb541" name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
  <package name="sqlite" version="3.8.3">
    <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
  <package name="gdbm" version="1.11">
    <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
  <package name="ncurses" version="6.0">
    <repository changeset_revision="9331b44bf167" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
  </package>
  <package name="python" version="2.7">
    <install version="1.0">
      <actions>
        <action type="download_by_url">https://www.python.org/ftp/python/2.7.10/Python-2.7.10.tgz</action>

        <action type="set_environment_for_install">
          <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
            <package name="zlib" version="1.2.8" />
          </repository>
          <repository changeset_revision="40f8ebe365e9" name="package_readline_6_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
            <package name="readline" version="6.3" />
          </repository>
          <repository changeset_revision="0d0ccd64f5d7" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
            <package name="bzlib" version="1.0.6" />
          </repository>
          <repository changeset_revision="c2168b2cb541" name="package_xz_5_0_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
            <package name="xz" version="5.0.5" />
          </repository>
          <repository changeset_revision="9ba893c2353f" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
            <package name="sqlite" version="3.8.3" />
          </repository>
          <repository changeset_revision="77ea468f199e" name="package_gdbm_1_11" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
            <package name="gdbm" version="1.11" />
          </repository>
          <repository changeset_revision="9331b44bf167" name="package_ncurses_6_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
            <package name="ncurses" version="6.0" />
          </repository>
        </action>
        <!-- by default python is not looking af LD_INCLUDE_PATH and Co. -->
        <action type="shell_command">sed -i.bak -e "s/if host_platform == 'atheos':/if True:/g" setup.py</action>

        <action type="shell_command">./configure &amp;&amp; make CFLAGS=-fPIC &amp;&amp; make install</action>
        <action type="download_file">https://bitbucket.org/pypa/setuptools/get/6.1.tar.bz2</action>
        <action type="shell_command">tar -xjf 6.1.tar.bz2</action>
        <action type="change_directory">pypa-setuptools-7ea80190d494</action>

        <action type="shell_command">
            export PATH=$PATH:$INSTALL_DIR/bin &amp;&amp;
            export PYTHONHOME=$INSTALL_DIR &amp;&amp;
            export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR &amp;&amp;
            export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python2.7/site-packages/ &amp;&amp;
            export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:$INSTALL_DIR/lib/pkgconfig &amp;&amp;
            $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
        </action>
        <action type="set_environment">
            <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
            <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
            <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable>
            <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
            <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable>
            <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable>
            <!--
            <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$ENV[OPENSSL_ROOT_DIR]/lib/pkgconfig</environment_variable>
            <environment_variable action="prepend_to" name="LIBRARY_PATH">$ENV[OPENSSL_ROOT_DIR]/lib/</environment_variable>
            <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[OPENSSL_ROOT_DIR]/lib/</environment_variable>
            <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$ENV[OPENSSL_ROOT_DIR]/include/</environment_variable>
            <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$ENV[OPENSSL_ROOT_DIR]/include/</environment_variable>
            -->
        </action>
      </actions>
    </install>

    <readme>
      The Python programming language version 2.7.

      http://www.python.org
    </readme>

  </package>
</tool_dependency>