Mercurial > repos > iuc > package_mummer_3_23
changeset 1:fa0ec960c47d draft default tip
Uploaded
| author | iuc |
|---|---|
| date | Tue, 24 Feb 2015 22:40:49 -0500 |
| parents | 020178be49ee |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 7 insertions(+), 1 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu May 22 08:48:29 2014 -0400 +++ b/tool_dependencies.xml Tue Feb 24 22:40:49 2015 -0500 @@ -18,8 +18,14 @@ </actions> </install> <readme> +MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. +For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, +using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it can easily handle the 100s or 1000s +of contigs from a shotgun sequencing project, and will align them to another set of contigs or a genome using the NUCmer program included with the system. +If the species are too divergent for a DNA sequence alignment to detect similarity, then the PROmer program can generate +alignments based upon the six-frame translations of both input sequences. + http://mummer.sourceforge.net/ -MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it can easily handle the 100s or 1000s of contigs from a shotgun sequencing project, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for a DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences. </readme> </package> </tool_dependency>