Mercurial > repos > iuc > package_meme_4_10_0
changeset 3:af432100f142 draft
Uploaded
| author | iuc |
|---|---|
| date | Thu, 19 Mar 2015 22:39:52 -0400 |
| parents | 8bfbf6a78022 |
| children | b6500c7bd364 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 31 insertions(+), 49 deletions(-) [+] |
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--- a/tool_dependencies.xml Fri Nov 14 12:03:12 2014 -0500 +++ b/tool_dependencies.xml Thu Mar 19 22:39:52 2015 -0400 @@ -1,60 +1,42 @@ <?xml version="1.0"?> <tool_dependency> - <package name="libxml2" version="2.9.1"> - <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> <package name="libxslt" version="1.1.28"> - <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="perl" version="5.18.1"> - <repository changeset_revision="a1a111b9faa5" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="graphicsmagick" version="1.3.18"> - <repository changeset_revision="bff3f66adff2" name="package_graphicsmagick_1_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="ghostscript" version="9.07"> - <repository changeset_revision="a08337c218bc" name="package_ghostscript_9_07" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="meme_perl" version="4.10.0"> - <repository changeset_revision="837317b846ca" name="package_meme_perl_4_10_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="perl_xml_parser_expat" version="2.41"> - <repository changeset_revision="64b45c6a5c36" name="package_perl_xml_parser_expat_2_41" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="meme" version="4.10.0"> + <package name="meme" version="4.10.0_4"> <install version="1.0"> - <actions> - - <action type="download_by_url">http://ebi.edu.au/ftp/software/MEME/4.10.0/meme_4.10.0_1.tar.gz</action> - - <action type="set_environment_for_install"> - <repository changeset_revision="926b471a2e43" name="package_libxml2_2_9_1" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu"> - <package name="libxml2" version="2.9.1" /> - </repository> - <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu"> - <package name="libxslt" version="1.1.28" /> - </repository> - <repository changeset_revision="bff3f66adff2" name="package_graphicsmagick_1_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> - <package name="graphicsmagick" version="1.3.18" /> - </repository> - <repository changeset_revision="a08337c218bc" name="package_ghostscript_9_07" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> - <package name="ghostscript" version="9.07" /> - </repository> - <repository changeset_revision="837317b846ca" name="package_meme_perl_4_10_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> - <package name="meme_perl" version="4.10.0" /> - </repository> - <repository changeset_revision="64b45c6a5c36" name="package_perl_xml_parser_expat_2_41" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> - <package name="perl_xml_parser_expat" version="4.41" /> - </repository> - </action> - - <action type="autoconf">--with-url=http://meme.nbcr.net/meme</action> + <actions_group> + <actions architecture="x86_64" os="linux"> + <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/meme/meme-4.10.0_4-Linux-x86_64.tgz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <actions architecture="x86_64" os="darwin"> + <action type="download_by_url">https://depot.galaxyproject.org/package/darwin/x86_64/meme/meme-4.10.0_4-Darwin-x86_64.tgz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <actions> + <action type="set_environment_for_install"> + <repository changeset_revision="a8d63d4be58f" name="package_libxslt_1_1_28" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="libxslt" version="1.1.28" /> + </repository> + </action> + <action type="download_by_url">http://ebi.edu.au/ftp/software/MEME/4.10.0/meme_4.10.0_4.tar.gz</action> + <action type="shell_command">./configure --prefix=$INSTALL_DIR</action> + <action type="shell_command">make</action> + <action type="shell_command">make install</action> + </actions> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - <environment_variable action="set_to" name="MEME_ROOT_DIR">$INSTALL_DIR</environment_variable> </action> - </actions> + </actions_group> </install> - <readme>Motif-based sequence analysis tools. http://meme.nbcr.net</readme> + <readme> + </readme> </package> </tool_dependency>